Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G156600.1 | Wheat | nucleus | 98.98 | 98.98 |
| TraesCS1B01G173700.1 | Wheat | nucleus | 99.27 | 98.84 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 97.24 | 97.24 |
| EER94066 | Sorghum | nucleus | 83.58 | 83.45 |
| Zm00001d014013_P002 | Maize | nucleus | 77.62 | 82.92 |
| Os10t0479900-01 | Rice | nucleus | 82.99 | 81.81 |
| Zm00001d032683_P001 | Maize | nucleus | 80.23 | 81.06 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 61.05 | 69.19 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 55.81 | 67.02 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 50.29 | 66.67 |
| GSMUA_Achr11P... | Banana | nucleus | 58.28 | 66.39 |
| GSMUA_Achr11P... | Banana | nucleus | 51.89 | 65.99 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 53.2 | 65.47 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 52.18 | 65.15 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 64.68 | 62.59 |
| Solyc09g007810.2.1 | Tomato | nucleus | 62.21 | 61.67 |
| PGSC0003DMT400055522 | Potato | nucleus | 61.92 | 61.56 |
| VIT_13s0019g04380.t01 | Wine grape | nucleus | 60.47 | 61.27 |
| TraesCS7D01G436800.1 | Wheat | nucleus | 61.63 | 61.01 |
| VIT_08s0040g01810.t01 | Wine grape | nucleus | 55.09 | 60.83 |
| KRH25023 | Soybean | nucleus | 60.9 | 59.77 |
| Solyc11g069500.1.1 | Tomato | nucleus | 60.47 | 59.51 |
| KRH29907 | Soybean | nucleus | 60.03 | 59.25 |
| PGSC0003DMT400020874 | Potato | nucleus | 60.03 | 59.08 |
| KRH26435 | Soybean | nucleus | 60.03 | 59.0 |
| KRH22880 | Soybean | nucleus | 57.27 | 58.81 |
| KRH32480 | Soybean | nucleus | 59.45 | 58.43 |
| CDX68620 | Canola | nucleus | 51.89 | 57.86 |
| CDY43553 | Canola | nucleus | 51.31 | 57.77 |
| Bra011162.1-P | Field mustard | nucleus | 53.2 | 56.57 |
| KRG95987 | Soybean | nucleus | 57.27 | 56.29 |
| AT4G30080.1 | Thale cress | nucleus | 53.78 | 55.22 |
| CDY15734 | Canola | nucleus | 54.22 | 54.85 |
| PGSC0003DMT400062489 | Potato | nucleus | 53.63 | 54.59 |
| CDY04557 | Canola | nucleus | 54.22 | 54.45 |
| KRH34867 | Soybean | nucleus | 48.26 | 54.25 |
| Solyc06g075150.2.1 | Tomato | nucleus | 52.76 | 54.1 |
| AT2G28350.1 | Thale cress | nucleus | 54.22 | 53.82 |
| KRG91907 | Soybean | nucleus | 46.37 | 53.79 |
| Bra011955.1-P | Field mustard | nucleus | 54.94 | 53.62 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 52.03 | 50.14 |
| Bra024109.1-P | Field mustard | nucleus | 50.15 | 49.71 |
| TraesCS6D01G212700.1 | Wheat | plastid | 54.51 | 48.76 |
| Solyc10g086130.1.1 | Tomato | nucleus | 43.6 | 47.54 |
| CDY46728 | Canola | nucleus | 53.34 | 43.48 |
| CDY30172 | Canola | nucleus | 50.44 | 41.81 |
| TraesCS2D01G577800.1 | Wheat | nucleus | 27.18 | 36.45 |
| TraesCS7D01G463000.1 | Wheat | nucleus | 16.57 | 32.2 |
| TraesCS1D01G337400.1 | Wheat | nucleus | 26.6 | 26.22 |
| TraesCS3D01G245400.2 | Wheat | nucleus | 26.74 | 24.63 |
| TraesCS1D01G404400.1 | Wheat | nucleus | 26.31 | 24.63 |
| TraesCS3D01G292100.1 | Wheat | plastid | 24.71 | 24.53 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:Auxin_resp | InterPro:B3_DNA-bd |
| InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009987 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 |
| PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF36 | SMART:SM01019 | SUPFAM:SSF101936 |
| EnsemblPlantsGene:TraesCS1D01G155100 | EnsemblPlants:TraesCS1D01G155100.1 | TIGR:cd10017 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1D:+:217142999..217146858
Molecular Weight (calculated)
74328.0 Da
IEP (calculated)
7.692
GRAVY (calculated)
-0.200
Length
688 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEVGEERCL DPQLWHACAG GMVQMPPARS RVYYFPQGHA EHANGGGGSA AAELAAAVGP RPLPALVLCC VAGVRFLADP ETDEVFAKIR LVPVGPGEAG
101: FREPEGLGGD PAEARDKLAS FAKTLTQSDA NNGGGFSVPR YCAETIFPKL DYRADPPVQT VLAKDVHGEV WKFRHIYRGT PRRHLLTTGW STFVNQKKLV
201: AGDSIVFLRT EHGELCVGIR RAKRVTCGGM ECISGWNAPG YGGFSAFLKD EENKMMNGGP AGYVKGRGKV KIADVAEAAT LAANSQPFEV VYYPRASTPE
301: FVVKAAAMQA AMRIHWCPGM RFKMAFETED SSRISWFMGT ISSVQVADPL RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSPPRK
401: KLRVPQHPDF PLDGHLFNPI FHGNPLGPSN SPLCCYSDNN SPAGIQGARH AQFGLPLTDH QLNKLHLGLF HGGGFNRLDA LTPSSRIPKG FVLSSAPAHD
501: SVSCLLTIGT PQSTEKSVDR KTPHIMLFGK AILTEQQMTS SGSRETLSSG ATGNSSPIST GLKAGNASDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM
601: ESEDVGRTID LSVFGSYDEL YGRLADMFGI EKEEIISHLR YRDTAGAVMH TGGLPFSDFM KVARRLTIIS GEKGGLAKPL IECMVQRV
101: FREPEGLGGD PAEARDKLAS FAKTLTQSDA NNGGGFSVPR YCAETIFPKL DYRADPPVQT VLAKDVHGEV WKFRHIYRGT PRRHLLTTGW STFVNQKKLV
201: AGDSIVFLRT EHGELCVGIR RAKRVTCGGM ECISGWNAPG YGGFSAFLKD EENKMMNGGP AGYVKGRGKV KIADVAEAAT LAANSQPFEV VYYPRASTPE
301: FVVKAAAMQA AMRIHWCPGM RFKMAFETED SSRISWFMGT ISSVQVADPL RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSPPRK
401: KLRVPQHPDF PLDGHLFNPI FHGNPLGPSN SPLCCYSDNN SPAGIQGARH AQFGLPLTDH QLNKLHLGLF HGGGFNRLDA LTPSSRIPKG FVLSSAPAHD
501: SVSCLLTIGT PQSTEKSVDR KTPHIMLFGK AILTEQQMTS SGSRETLSSG ATGNSSPIST GLKAGNASDG SGSSICIGFS SQGHEASDLG LEAGHCKVFM
601: ESEDVGRTID LSVFGSYDEL YGRLADMFGI EKEEIISHLR YRDTAGAVMH TGGLPFSDFM KVARRLTIIS GEKGGLAKPL IECMVQRV
001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV
Arabidopsis Description
ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.