Factsheet for Bra024109.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001670.1-P
Bra021257.1-P
Bra022224.1-P
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30080.1	Bra001670.1-P	AT3G17600.1	21798944
AT4G30080.1	Bra021257.1-P	AT3G17600.1	21798944
AT4G30080.1	Bra022224.1-P	AT3G17600.1	21798944
AT4G30080.1	Bra025431.1-P	AT5G38420.1	21798944
AT4G30080.1	Bra028174.1-P	AT5G38420.1	21798944
AT4G30080.1	Bra028181.1-P	AT5G38420.1	21798944
AT4G30080.1	Bra028406.1-P	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G30080.1	Thale cress	nucleus	83.57	86.57
Bra011162.1-P	Field mustard	nucleus	78.24	83.93
CDY30172	Canola	nucleus	99.57	83.25
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	10.37	64.29
HORVU5Hr1G024100.1	Barley	cytosol	12.68	58.28
HORVU3Hr1G081710.1	Barley	cytosol	8.79	58.1
VIT_13s0019g04380.t01	Wine grape	nucleus	56.34	57.58
GSMUA_Achr4P18240_001	Banana	nucleus	50.29	57.5
GSMUA_Achr11P...	Banana	nucleus	43.08	55.27
GSMUA_Achr8P18930_001	Banana	nucleus	45.53	55.15
GSMUA_Achr5P18540_001	Banana	nucleus	40.2	53.76
GSMUA_Achr5P03960_001	Banana	nucleus	42.94	53.31
GSMUA_Achr5P14630_001	Banana	nucleus	41.79	52.63
GSMUA_Achr11P...	Banana	nucleus	45.68	52.48
Os06t0685700-01	Rice	nucleus	52.59	52.14
Zm00001d014013_P002	Maize	nucleus	48.13	51.86
TraesCS7B01G346700.1	Wheat	nucleus	51.3	51.3
EER88840	Sorghum	nucleus	52.31	51.2
Os04t0519700-01	Rice	nucleus	28.82	51.02
TraesCS7D01G436800.1	Wheat	nucleus	50.86	50.79
KRG91907	Soybean	nucleus	43.23	50.59
HORVU7Hr1G101270.1	Barley	nucleus	50.58	50.36
TraesCS1A01G156600.1	Wheat	nucleus	49.86	50.29
TraesCS1D01G155100.1	Wheat	nucleus	49.71	50.15
TraesCS7A01G446900.1	Wheat	nucleus	50.58	50.07
TraesCS1B01G173700.1	Wheat	nucleus	49.71	49.93
HORVU1Hr1G041770.1	Barley	nucleus	49.42	49.85
KRH34867	Soybean	nucleus	43.95	49.84
Os02t0628600-01	Rice	nucleus	48.85	49.78
EER94066	Sorghum	nucleus	49.28	49.64
Zm00001d000358_P001	Maize	nucleus	49.86	49.43
Zm00001d032683_P001	Maize	nucleus	48.41	49.34
Zm00001d014507_P002	Maize	nucleus	51.44	49.24
Os10t0479900-01	Rice	nucleus	48.99	48.71
Zm00001d017284_P001	Maize	nucleus	48.99	48.09
EES05458	Sorghum	nucleus	48.99	48.02
Bra011955.1-P	Field mustard	nucleus	48.7	47.94
TraesCS6A01G222300.1	Wheat	nucleus	44.81	46.28
TraesCS2B01G397300.1	Wheat	nucleus	46.97	46.05
Zm00001d051172_P001	Maize	nucleus	47.12	45.99
TraesCS2D01G376600.1	Wheat	nucleus	46.69	45.38
HORVU2Hr1G089670.1	Barley	nucleus	45.68	44.65
TraesCS6B01G258800.1	Wheat	mitochondrion	47.55	44.18
HORVU6Hr1G058890.2	Barley	mitochondrion	47.84	43.74
TraesCS6D01G212700.1	Wheat	plastid	47.98	43.3
KXG36152	Sorghum	nucleus	39.77	41.63
TraesCS2A01G380300.1	Wheat	nucleus	23.34	40.1
KXG26729	Sorghum	nucleus, plastid	41.64	40.03
HORVU7Hr1G021880.1	Barley	nucleus	11.96	37.56
Bra029293.1-P	Field mustard	nucleus	12.82	36.63
Zm00001d025871_P001	Maize	nucleus	30.84	36.39
Bra015651.1-P	Field mustard	nucleus	26.95	34.25
Bra003665.1-P	Field mustard	nucleus	26.66	33.88
HORVU2Hr1G089660.8	Barley	nucleus	11.38	24.31
Bra005465.1-P	Field mustard	nucleus	20.61	23.64
Bra021885.1-P	Field mustard	nucleus	18.44	23.19
Bra015374.1-P	Field mustard	nucleus	12.97	20.88

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01312	ProteinID:AFD01312.1
InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra024109	EnsemblPlants:Bra024109.1	EnsemblPlants:Bra024109.1-P	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EMBL:JN979478	UniProt:M4E5Q5	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002540D4B
SEG:seg	:	:	:	:	:

Description

AT4G30080 (E=3e-273) ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor

Coordinates

chrA03:-:27561549..27566737

Molecular Weight (calculated)

77321.7 Da

IEP (calculated)

7.757

GRAVY (calculated)

-0.456

Length

694 amino acids

Sequence
(BLAST)

001: MRSITCKTKS DRLKKTFRDQ ISDPLVYLCD EIALVTCKYY WMDINGDARI ITFVRNDKCN GSDEKRIRER FRSTAMACMC WRHGHAENAY DHVDFKNLPI
101: PPMVLCRVLA IKYMADPESD EVFAKLRLIP LKDDDHDYGD GQEGNGFETN SEKTPSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYNA EPPVQNILAK
201: DVHGDVWKFR HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFMRAESGD LCVGIRRAKR GGIGNGPEYS PGWNPIGGSC GYSSLLREDE SNSLRRSNCS
301: LADRKGKVAA ESVIEAATLA INGRGFEVVY YPRASTSEFC VKALDARAAM RIPWCSGMRF KMAFETEDSS RISWFMGTVS AVSVSDPIRW PNSPWRLLQV
401: AWDEPDLLQN VKRVNPWLVE LVSNVHPTPL TSFSPPRKKM RLPQHPDYNN LINSIPVPSF PSNPLIRSNP LSSVLDNVPV GLQGARHNAH QYYGLSSSDL
501: HHYYLNRPPP PPQPSALPLS QPLGLRNIDS RNEKGFCFLT MGTTPCNDDT ESKKSHIVLF GKLILPEEQI SEKGSTDTAN TSGGSKLSSS EEGSPCSNKA
601: HDAAGLETGH CKVFMESDDV GRTLDLSVLG SYEELSRKLS DMFGIQKAEM LSSVLYRDAS GAIKYAGNEP FSEFLKTARR LTIVTEQGSE SVVV

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.