CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88840
EER94066
EES00605
EES02172
EES05458
EES09292
EES13038
EES17832
KXG22376
KXG26729
KXG33336
KXG36152
OQU84670
OQU86163

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	EES13038	AT1G19850.1	22096563
AT2G28350.1	EES02172	AT1G34310.1	22096563
AT2G28350.1	EER88840	AT2G28350.1	22096563
AT2G28350.1	EER94066	AT2G28350.1	22096563
AT2G28350.1	EES05458	AT2G28350.1	22096563
AT2G28350.1	KXG26729	AT2G28350.1	22096563
AT2G28350.1	KXG36152	AT2G28350.1	22096563
AT2G28350.1	EES17832	AT3G16500.1	21734647
AT2G28350.1	KXG22376	AT3G16500.1	21734647
AT2G28350.1	KXG33336	AT3G16500.1	21734647
AT2G28350.1	OQU84670	AT3G16500.1	21734647
AT2G28350.1	OQU86163	AT3G16500.1	21734647
AT2G28350.1	EES02172	AT3G61830.1	22096563
AT2G28350.1	EES17832	AT5G25890.1	22096563
AT2G28350.1	KXG22376	AT5G25890.1	22096563
AT2G28350.1	KXG33336	AT5G25890.1	22096563
AT2G28350.1	OQU84670	AT5G25890.1	22096563
AT2G28350.1	OQU86163	AT5G25890.1	22096563
AT4G30080.1	EES00605	AT3G17600.1	21798944
AT4G30080.1	EES09292	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36152	Sorghum	nucleus	75.07	81.75
Zm00001d025871_P001	Maize	nucleus	51.38	63.1
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	9.42	60.71
HORVU3Hr1G081710.1	Barley	cytosol	8.73	60.0
Os04t0519700-01	Rice	nucleus	31.16	57.4
EES05458	Sorghum	nucleus	55.12	56.21
TraesCS2B01G397300.1	Wheat	nucleus	54.57	55.65
HORVU5Hr1G024100.1	Barley	cytosol	11.63	55.63
TraesCS2D01G376600.1	Wheat	nucleus	54.85	55.46
GSMUA_Achr4P18240_001	Banana	nucleus	45.71	54.37
HORVU2Hr1G089670.1	Barley	nucleus	53.05	53.94
GSMUA_Achr8P18930_001	Banana	nucleus	42.11	53.05
GSMUA_Achr11P...	Banana	nucleus	38.64	51.57
GSMUA_Achr5P03960_001	Banana	nucleus	39.89	51.52
TraesCS2A01G380300.1	Wheat	nucleus	28.67	51.24
GSMUA_Achr11P...	Banana	nucleus	42.66	50.99
GSMUA_Achr5P18540_001	Banana	nucleus	36.57	50.87
GSMUA_Achr5P14630_001	Banana	nucleus	38.5	50.45
EER88840	Sorghum	nucleus	48.75	49.65
VIT_08s0040g01810.t01	Wine grape	nucleus	42.38	49.12
CDY43553	Canola	nucleus	41.14	48.61
VIT_13s0019g04380.t01	Wine grape	nucleus	45.71	48.6
EER94066	Sorghum	nucleus	45.98	48.19
CDX68620	Canola	nucleus	41.14	48.14
Solyc09g007810.2.1	Tomato	nucleus	45.98	47.84
PGSC0003DMT400055522	Potato	nucleus	45.71	47.69
KRG95987	Soybean	nucleus	45.57	47.0
KRH32480	Soybean	nucleus	45.43	46.86
VIT_06s0004g02750.t01	Wine grape	nucleus	45.84	46.55
KRH22880	Soybean	nucleus	43.07	46.42
Bra011162.1-P	Field mustard	nucleus	41.55	46.37
KRH34867	Soybean	nucleus	39.06	46.08
KRG91907	Soybean	nucleus	37.67	45.87
AT4G30080.1	Thale cress	nucleus	42.52	45.82
KRH29907	Soybean	nucleus	44.04	45.62
KRH26435	Soybean	nucleus	43.63	45.0
KRH25023	Soybean	nucleus	43.63	44.94
Solyc11g069500.1.1	Tomato	nucleus	43.49	44.92
PGSC0003DMT400020874	Potato	nucleus	43.35	44.78
CDY15734	Canola	nucleus	41.0	43.53
Solyc06g075150.2.1	Tomato	nucleus	39.89	42.92
CDY04557	Canola	nucleus	40.58	42.77
PGSC0003DMT400062489	Potato	nucleus	40.03	42.75
AT2G28350.1	Thale cress	nucleus	40.72	42.42
Bra011955.1-P	Field mustard	nucleus	40.86	41.84
Bra024109.1-P	Field mustard	nucleus	40.03	41.64
Solyc10g086130.1.1	Tomato	nucleus	35.46	40.57
CDY46728	Canola	nucleus	41.97	35.9
HORVU7Hr1G021880.1	Barley	nucleus	10.66	34.84
CDY30172	Canola	nucleus	40.03	34.82
EES13156	Sorghum	nucleus	23.96	33.4
EES03412	Sorghum	nucleus	23.82	24.5
HORVU2Hr1G089660.8	Barley	nucleus	10.94	24.31
EES18676	Sorghum	nucleus	24.65	24.09
KXG22343	Sorghum	nucleus	22.16	23.67
KXG33384	Sorghum	nucleus	22.16	23.36

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1B6PM25	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KXG26729	ProteinID:KXG26729	ProteinID:KXG26729.1	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF37
SMART:SM01019	EnsemblPlantsGene:SORBI_3006G149600	SUPFAM:SSF101936	UniParc:UPI00081AEA04	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:51105992..51108790

Molecular Weight (calculated)

78112.3 Da

IEP (calculated)

8.136

GRAVY (calculated)

-0.357

Length

722 amino acids

Sequence
(BLAST)

001: MSAAAACAPT RRLGTTMLTF AARLPESPEE TEARRGAAAE PRGRDVDVHP RLWQACAGSM RAVPPVGAAV YYFPQGHAEH AGGAAVDLRV PPFVPCRVAA
101: VRLMADPDTD DVYARIRLVP LRAWEPVADV GDAALVKTDG SSRGGADGDG DGDAGGGQQQ QPRPLSFAKT LTPSDANNGG GFSVPRFCAL SIFPELDYSF
201: SPPVQFVSAR DVHGVEWTFR HIYRGTPRRH LLTTGWSNFV HNKKLQPGDS VVFVREEDGK VHIGLRRAKR VFCRRGGGGS NAGVAVAGPS DGKVPAEDVV
301: EAARLAAAGQ PFEVVHYPRA SAPEFVVRAA AVKESMQAPW CPGLRFKMAF ETEDLSRISW FMGTIAGVEP ADPARWPQSP WRLLQVTWDE PELLRNVNRV
401: CPWRVELVSS MPKLPRFSPP PRKKPRTPSY TETRSERQQL FDPAFPFPPT HPLPLAPPSL ALLPAPNHDG NRHDFVPSFP VIPDSIAAAG IQGARHLQFA
501: PFFSDLHLSD LQRSLLFSGI QPADHQAPPA PRIATGLKIG SPAPRSPSSE AKNGDDVKPP VIMLFGREIL TEEQMKSNSS TRSGSSKPDC DDEKTSSTSD
601: RSGSDVSHGS PAKKNSPSLT LWWSGDSSLS AFALEPGQCK VFVESDTLGR NLDLSALSSF EELCARLSSF FGINNADLRS HMVYRTIAGE VKHVGDEPFS
701: VFVKSARRIT ILTDAGSNNT GK

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.