CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88840
EER94066
EES00605
EES02172
EES05458
EES09292
EES13038
EES17832
KXG22376
KXG26729
KXG33336
KXG36152
OQU84670
OQU86163

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	EES13038	AT1G19850.1	22096563
AT2G28350.1	EES02172	AT1G34310.1	22096563
AT2G28350.1	EER88840	AT2G28350.1	22096563
AT2G28350.1	EER94066	AT2G28350.1	22096563
AT2G28350.1	EES05458	AT2G28350.1	22096563
AT2G28350.1	KXG26729	AT2G28350.1	22096563
AT2G28350.1	KXG36152	AT2G28350.1	22096563
AT2G28350.1	EES17832	AT3G16500.1	21734647
AT2G28350.1	KXG22376	AT3G16500.1	21734647
AT2G28350.1	KXG33336	AT3G16500.1	21734647
AT2G28350.1	OQU84670	AT3G16500.1	21734647
AT2G28350.1	OQU86163	AT3G16500.1	21734647
AT2G28350.1	EES02172	AT3G61830.1	22096563
AT2G28350.1	EES17832	AT5G25890.1	22096563
AT2G28350.1	KXG22376	AT5G25890.1	22096563
AT2G28350.1	KXG33336	AT5G25890.1	22096563
AT2G28350.1	OQU84670	AT5G25890.1	22096563
AT2G28350.1	OQU86163	AT5G25890.1	22096563
AT4G30080.1	EES00605	AT3G17600.1	21798944
AT4G30080.1	EES09292	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26729	Sorghum	nucleus, plastid	81.75	75.07
Zm00001d025871_P001	Maize	nucleus	50.23	56.63
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	9.35	55.36
HORVU3Hr1G081710.1	Barley	cytosol	8.75	55.24
TraesCS2B01G397300.1	Wheat	nucleus	57.62	53.95
TraesCS2D01G376600.1	Wheat	nucleus	57.92	53.78
Os04t0519700-01	Rice	nucleus	31.67	53.57
EES05458	Sorghum	nucleus	55.96	52.4
HORVU2Hr1G089670.1	Barley	nucleus	55.66	51.97
GSMUA_Achr11P...	Banana	nucleus	41.03	50.28
GSMUA_Achr4P18240_001	Banana	nucleus	45.7	49.92
TraesCS2A01G380300.1	Wheat	nucleus	30.32	49.75
HORVU5Hr1G024100.1	Barley	cytosol	11.31	49.67
GSMUA_Achr8P18930_001	Banana	nucleus	42.53	49.21
GSMUA_Achr11P...	Banana	nucleus	44.65	49.01
GSMUA_Achr5P03960_001	Banana	nucleus	41.03	48.66
GSMUA_Achr5P18540_001	Banana	nucleus	37.71	48.17
GSMUA_Achr5P14630_001	Banana	nucleus	39.52	47.55
EER88840	Sorghum	nucleus	50.53	47.25
CDY43553	Canola	nucleus	42.84	46.48
VIT_08s0040g01810.t01	Wine grape	nucleus	43.59	46.39
CDX68620	Canola	nucleus	42.68	45.87
EER94066	Sorghum	nucleus	47.51	45.72
VIT_13s0019g04380.t01	Wine grape	nucleus	46.3	45.21
PGSC0003DMT400055522	Potato	nucleus	47.06	45.09
Solyc09g007810.2.1	Tomato	nucleus	47.06	44.96
Bra011162.1-P	Field mustard	nucleus	43.14	44.2
KRH32480	Soybean	nucleus	46.3	43.86
KRG95987	Soybean	nucleus	46.3	43.86
VIT_06s0004g02750.t01	Wine grape	nucleus	46.91	43.74
AT4G30080.1	Thale cress	nucleus	43.74	43.28
KRH22880	Soybean	nucleus	43.59	43.13
KRH29907	Soybean	nucleus	45.1	42.9
KRH25023	Soybean	nucleus	45.25	42.8
Solyc11g069500.1.1	Tomato	nucleus	44.8	42.49
PGSC0003DMT400020874	Potato	nucleus	44.65	42.35
KRG91907	Soybean	nucleus	37.86	42.33
KRH26435	Soybean	nucleus	44.65	42.29
KRH34867	Soybean	nucleus	38.76	41.99
CDY15734	Canola	nucleus	42.99	41.91
CDY04557	Canola	nucleus	42.53	41.17
AT2G28350.1	Thale cress	nucleus	42.53	40.69
Solyc06g075150.2.1	Tomato	nucleus	41.03	40.54
PGSC0003DMT400062489	Potato	nucleus	41.18	40.38
Bra011955.1-P	Field mustard	nucleus	42.84	40.28
Bra024109.1-P	Field mustard	nucleus	41.63	39.77
Solyc10g086130.1.1	Tomato	nucleus	36.35	38.19
CDY46728	Canola	nucleus	43.59	34.24
HORVU7Hr1G021880.1	Barley	nucleus	11.16	33.48
CDY30172	Canola	nucleus	41.63	33.25
EES13156	Sorghum	nucleus	23.38	29.92
HORVU2Hr1G089660.8	Barley	nucleus	11.46	23.38
KXG22343	Sorghum	nucleus	22.78	22.34
EES03412	Sorghum	nucleus	23.53	22.22
KXG33384	Sorghum	nucleus	22.62	21.9
EES18676	Sorghum	nucleus	24.13	21.65

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1B6QE14	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KXG36152	ProteinID:KXG36152	ProteinID:KXG36152.1	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF37
SMART:SM01019	EnsemblPlantsGene:SORBI_3002G290600	SUPFAM:SSF101936	UniParc:UPI00081AC5ED	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:66893100..66895299

Molecular Weight (calculated)

72697.0 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.459

Length

663 amino acids

Sequence
(BLAST)

001: MSTCAPTRLG TTLTFAAREP PSPEPEDKGR DVHPQLWQAC AGSMCAVPPV GAADYYFPQG HAEQAGAAVD LRVVPPFVAC RVAAVRLMAE PDTDDIYAKI
101: RLVPLRPWEP VTDVGDALLG EGSRGGDGDG QQRRRRRPRP LSFAKTLTQS DVNTGGGFTV PRLCALSIFP ELDYSFDPPL QFIPATDVHG VEWTFRHVYR
201: GNPPRHLITA GWSNFVHNKK LLPGDSVVFV REEDGKVHIG LRRAKRVFCG GNAGRSGAAV AGPSDGKVPA EDVVEAARLA AAGQPFEVVH YPRASAPEFC
301: VRADAVKESM RSPWCPGLRF KMAFETEDLS RISWFMGTIA GVEPADPARW PLSPWRLLQV TWDEPELLQN VKRVCPWRVE LVSSMPNLPW FSPPPRKKPR
401: TPAYTETLSE SERQQLFDPA FPFPPTPPLP FFSDLHLSKY LEQSLLSYGI RPADHQAPPA PRIDTDLKNG SPTPRSPSTE AKKGDDVKPP GTIMLFGRAI
501: LTEEQMKRSN GSGGVPTSPR ATSSGDEKAS NTSDRSRSDV SHGSPAAKKI SPSSWRLWRS GDSSPSEFAL EPGQCKVFVE SETLGRNLDL SALGSLEELC
601: ARLSSMFGIS NNAELRSHMV YRTISGEVKH IGDEPFSVFV KSARRITIYT DRRDAGSDNT GNR

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.