Factsheet for PGSC0003DMT400062489

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000345
PGSC0003DMT400006709
PGSC0003DMT400009660
PGSC0003DMT400020839
PGSC0003DMT400020874
PGSC0003DMT400031965
PGSC0003DMT400062489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	PGSC0003DMT400009660	AT1G19850.1	22096563
AT2G28350.1	PGSC0003DMT400031965	AT1G34310.1	22096563
AT2G28350.1	PGSC0003DMT400020874	AT2G28350.1	22096563
AT2G28350.1	PGSC0003DMT400062489	AT2G28350.1	22096563
AT2G28350.1	PGSC0003DMT400006709	AT3G16500.1	21734647
AT2G28350.1	PGSC0003DMT400000345	AT3G61830.1	22096563
AT2G28350.1	PGSC0003DMT400020839	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g075150.2.1	Tomato	nucleus	90.83	91.51
PGSC0003DMT400020874	Potato	nucleus	69.82	67.53
VIT_06s0004g02750.t01	Wine grape	nucleus	63.31	60.2
GSMUA_Achr8P18930_001	Banana	nucleus	50.74	59.86
KRH22880	Soybean	nucleus	58.73	59.25
GSMUA_Achr4P18240_001	Banana	nucleus	52.96	58.98
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	9.62	58.04
GSMUA_Achr5P18540_001	Banana	nucleus	44.38	57.8
KRH26435	Soybean	nucleus	59.32	57.29
GSMUA_Achr11P...	Banana	nucleus	45.71	57.12
PGSC0003DMT400055522	Potato	nucleus	58.14	56.79
KRH29907	Soybean	nucleus	58.43	56.67
KRH25023	Soybean	nucleus	58.58	56.49
GSMUA_Achr5P14630_001	Banana	nucleus	46.01	56.44
GSMUA_Achr5P03960_001	Banana	nucleus	46.15	55.81
Zm00001d014013_P002	Maize	nucleus	52.96	55.59
EER94066	Sorghum	nucleus	55.92	54.86
Zm00001d032683_P001	Maize	nucleus	54.88	54.48
GSMUA_Achr11P...	Banana	nucleus	48.67	54.47
TraesCS1B01G173700.1	Wheat	nucleus	54.88	53.69
TraesCS1D01G155100.1	Wheat	nucleus	54.59	53.63
TraesCS1A01G156600.1	Wheat	nucleus	54.59	53.63
TraesCS7B01G346700.1	Wheat	nucleus	55.03	53.6
HORVU1Hr1G041770.1	Barley	nucleus	54.44	53.49
TraesCS7D01G436800.1	Wheat	nucleus	54.73	53.24
Os06t0685700-01	Rice	nucleus	55.03	53.14
CDY15734	Canola	nucleus	53.4	53.09
HORVU7Hr1G101270.1	Barley	nucleus	54.44	52.8
TraesCS7A01G446900.1	Wheat	nucleus	54.73	52.78
Os10t0479900-01	Rice	nucleus	54.44	52.72
CDY04557	Canola	nucleus	53.25	52.55
Os04t0519700-01	Rice	nucleus	30.47	52.55
HORVU3Hr1G081710.1	Barley	cytosol	8.14	52.38
EER88840	Sorghum	nucleus	54.73	52.19
AT2G28350.1	Thale cress	nucleus	53.11	51.8
Bra011955.1-P	Field mustard	nucleus	53.85	51.63
Zm00001d000358_P001	Maize	nucleus	52.81	51.0
Os02t0628600-01	Rice	nucleus	51.33	50.95
Zm00001d014507_P002	Maize	nucleus	54.59	50.9
HORVU5Hr1G024100.1	Barley	cytosol	10.95	49.01
EES05458	Sorghum	nucleus	50.59	48.31
Zm00001d017284_P001	Maize	nucleus	50.3	48.09
TraesCS6A01G222300.1	Wheat	nucleus	47.49	47.77
Zm00001d051172_P001	Maize	nucleus	48.37	45.99
TraesCS2D01G376600.1	Wheat	nucleus	47.49	44.96
TraesCS2B01G397300.1	Wheat	nucleus	47.04	44.92
TraesCS6B01G258800.1	Wheat	mitochondrion	49.26	44.58
HORVU2Hr1G089670.1	Barley	nucleus	46.3	44.08
HORVU6Hr1G058890.2	Barley	mitochondrion	49.26	43.87
TraesCS6D01G212700.1	Wheat	plastid	49.41	43.43
PGSC0003DMT400071449	Potato	nucleus	22.63	42.38
KXG36152	Sorghum	nucleus	40.38	41.18
KXG26729	Sorghum	nucleus, plastid	42.75	40.03
TraesCS2A01G380300.1	Wheat	nucleus	23.22	38.86
Zm00001d025871_P001	Maize	nucleus	32.99	37.93
HORVU7Hr1G021880.1	Barley	nucleus	10.95	33.48
PGSC0003DMT400045323	Potato	cytosol	12.13	30.6
HORVU2Hr1G089660.8	Barley	nucleus	12.87	26.77
PGSC0003DMT400081282	Potato	nucleus	26.63	24.06
PGSC0003DMT400059999	Potato	nucleus	17.16	17.85

Protein Annotations

EntrezGene:102599257	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	UniProt:M1C954	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507
EnsemblPlantsGene:PGSC0003DMG400024320	PGSC:PGSC0003DMG400024320	EnsemblPlants:PGSC0003DMT400062489	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF27	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00029592A6	RefSeq:XP_006365732.1	SEG:seg

Description

Auxin response factor 16 [Source:PGSC_GENE;Acc:PGSC0003DMG400024320]

Coordinates

chr6:+:55805067..55808251

Molecular Weight (calculated)

75425.4 Da

IEP (calculated)

5.927

GRAVY (calculated)

-0.333

Length

676 amino acids

Sequence
(BLAST)

001: MEVVEEKCVD SQFWHACTGS MVQIPPVNSK VFYFPQGHAE HTYTNVDFTL LPRIPAMILC RVDTVKFLAD TETDEVYAKI RLIPVEDFED DSVVEKTEKP
101: TFFAKTLTQS DANNGGGFSA PRYCAETIFP KLDLKADPPV QVVKAKDVHG ETWNFRHIYR GTPRRHLLTS GWSAFVNKKK LVAGDSVVFL KAENDELCVG
201: IRRVKRGGIG GPETQSGWNS TTGSYGGFLT EDENSMIRSC SNENLISYGG RFRDKGKVSP DEIVRDSYLA ASGQPFEIVY YPGASTPEYC VRASSVHAAM
301: SVQWCSGMRF KMAFETEGSS RISWFMGSIS SVQVADPIRW PHSPWRLLQV TWDEPDLLQN VKSVNPWLVE LVSNMPDINL SHFSPPRKRL CLPQELALDR
401: QFPLPSFSGN PLRSSSPFCY PSDNSTAGIQ GARHVQFGVP LLDLHRSEKL QLGVLQPPAS QQVDADSESP IGTSKVQKES NENVSCLLTM GTSSQMEEAD
501: NVKTPRFLLF GQPILTEQQM SSVLSTHAPP QVQAERDSDW AQLKTERISQ GWKCLSESLS STTFLWNKGY HTAELGASTD HCKVFLDSED VGLTLDLSVL
601: GSYAELYKRL ADMFEMERLD MVTRVLYLDA TGASKQIGDE PFSDFIKTAK RLTILKKSGN SATRKWLTDL PILNVV

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.