Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15734 | Canola | nucleus | 88.17 | 89.85 |
| CDY04557 | Canola | nucleus | 88.6 | 89.64 |
| Bra011955.1-P | Field mustard | nucleus | 90.33 | 88.79 |
| HORVU4Hr1G078490.1 | Barley | cytosol, nucleus, plastid | 10.39 | 64.29 |
| VIT_06s0004g02750.t01 | Wine grape | nucleus | 64.36 | 62.73 |
| KRH22880 | Soybean | nucleus | 59.31 | 61.34 |
| GSMUA_Achr8P18930_001 | Banana | nucleus | 50.36 | 60.91 |
| GSMUA_Achr4P18240_001 | Banana | nucleus | 52.96 | 60.46 |
| GSMUA_Achr11P... | Banana | nucleus | 46.9 | 60.07 |
| KRH26435 | Soybean | nucleus | 59.88 | 59.29 |
| GSMUA_Achr11P... | Banana | nucleus | 51.52 | 59.11 |
| KRH25023 | Soybean | nucleus | 59.45 | 58.77 |
| KRH29907 | Soybean | nucleus | 58.87 | 58.54 |
| Solyc11g069500.1.1 | Tomato | nucleus | 58.87 | 58.37 |
| PGSC0003DMT400020874 | Potato | nucleus | 58.87 | 58.37 |
| GSMUA_Achr5P18540_001 | Banana | nucleus | 43.58 | 58.19 |
| HORVU3Hr1G081710.1 | Barley | cytosol | 8.8 | 58.1 |
| HORVU5Hr1G024100.1 | Barley | cytosol | 12.55 | 57.62 |
| GSMUA_Achr5P14630_001 | Banana | nucleus | 45.6 | 57.35 |
| GSMUA_Achr5P03960_001 | Banana | nucleus | 45.89 | 56.89 |
| Zm00001d014013_P002 | Maize | nucleus | 52.38 | 56.37 |
| Os06t0685700-01 | Rice | nucleus | 56.57 | 56.0 |
| Os04t0519700-01 | Rice | nucleus | 31.46 | 55.61 |
| TraesCS7D01G436800.1 | Wheat | nucleus | 55.41 | 55.25 |
| TraesCS7B01G346700.1 | Wheat | nucleus | 55.27 | 55.19 |
| AT4G30080.1 | Thale cress | nucleus | 53.25 | 55.07 |
| EER88840 | Sorghum | nucleus | 56.13 | 54.87 |
| EER94066 | Sorghum | nucleus | 54.11 | 54.43 |
| TraesCS7A01G446900.1 | Wheat | nucleus | 54.98 | 54.35 |
| Os10t0479900-01 | Rice | nucleus | 54.69 | 54.3 |
| HORVU7Hr1G101270.1 | Barley | nucleus | 54.55 | 54.23 |
| TraesCS1D01G155100.1 | Wheat | nucleus | 53.82 | 54.22 |
| TraesCS1A01G156600.1 | Wheat | nucleus | 53.82 | 54.22 |
| TraesCS1B01G173700.1 | Wheat | nucleus | 53.97 | 54.12 |
| HORVU1Hr1G041770.1 | Barley | nucleus | 53.25 | 53.63 |
| Zm00001d032683_P001 | Maize | nucleus | 52.67 | 53.6 |
| Solyc06g075150.2.1 | Tomato | nucleus | 51.52 | 53.2 |
| PGSC0003DMT400062489 | Potato | nucleus | 51.8 | 53.11 |
| Zm00001d014507_P002 | Maize | nucleus | 55.27 | 52.83 |
| Zm00001d000358_P001 | Maize | nucleus | 52.67 | 52.14 |
| Os02t0628600-01 | Rice | nucleus | 51.23 | 52.13 |
| EES05458 | Sorghum | nucleus | 52.38 | 51.27 |
| Zm00001d017284_P001 | Maize | nucleus | 51.23 | 50.21 |
| TraesCS6A01G222300.1 | Wheat | nucleus | 48.34 | 49.85 |
| Zm00001d051172_P001 | Maize | nucleus | 50.79 | 49.51 |
| TraesCS2D01G376600.1 | Wheat | nucleus | 49.49 | 48.04 |
| TraesCS2B01G397300.1 | Wheat | nucleus | 49.06 | 48.02 |
| HORVU2Hr1G089670.1 | Barley | nucleus | 47.91 | 46.76 |
| TraesCS6B01G258800.1 | Wheat | mitochondrion | 49.93 | 46.32 |
| HORVU6Hr1G058890.2 | Barley | mitochondrion | 49.35 | 45.06 |
| TraesCS6D01G212700.1 | Wheat | plastid | 49.49 | 44.6 |
| KXG36152 | Sorghum | nucleus | 40.69 | 42.53 |
| KXG26729 | Sorghum | nucleus, plastid | 42.42 | 40.72 |
| TraesCS2A01G380300.1 | Wheat | nucleus | 23.52 | 40.35 |
| Zm00001d025871_P001 | Maize | nucleus | 33.91 | 39.97 |
| AT1G77850.2 | Thale cress | nucleus | 30.59 | 35.57 |
| HORVU7Hr1G021880.1 | Barley | nucleus | 11.26 | 35.29 |
| ATMG00940.1 | Thale cress | cytosol | 7.94 | 33.54 |
| AT1G43950.1 | Thale cress | nucleus | 10.1 | 31.53 |
| AT2G33860.1 | Thale cress | nucleus | 23.81 | 27.14 |
| HORVU2Hr1G089660.8 | Barley | nucleus | 12.55 | 26.77 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | EntrezGene:817382 | UniProt:A0A178VN78 |
| ProteinID:AAD20695.1 | EMBL:AB493569 | ProteinID:ACB30883.1 | ProteinID:ACB30884.1 | ProteinID:ACB30885.1 | ProteinID:ACB30886.1 |
| ProteinID:ACB30887.1 | ProteinID:ACB30888.1 | ProteinID:ACB30889.1 | ProteinID:ACB30890.1 | ProteinID:ACB30891.1 | ProteinID:ACB30892.1 |
| ProteinID:ACB30893.1 | ProteinID:ACB30894.1 | ProteinID:ACB30895.1 | ProteinID:ACB30896.1 | ProteinID:ACB30897.1 | ProteinID:ACB30898.1 |
| ProteinID:ACB30899.1 | ProteinID:ACB30900.1 | ProteinID:ACB30901.1 | ProteinID:ACB30902.1 | ProteinID:ACB30903.1 | ProteinID:ACB30904.1 |
| ProteinID:ACB30905.1 | ProteinID:AEC08110.1 | EMBL:AF099735 | EMBL:AF325073 | EMBL:AF336919 | EMBL:AK228534 |
| ProteinID:ANM62841.1 | Symbol:ARF10 | ArrayExpress:AT2G28350 | EnsemblPlantsGene:AT2G28350 | RefSeq:AT2G28350 | TAIR:AT2G28350 |
| RefSeq:AT2G28350-TAIR-G | EnsemblPlants:AT2G28350.1 | TAIR:AT2G28350.1 | InterPro:Auxin_resp | InterPro:B3_DNA-bd | UniProt:C0SV66 |
| ncoils:Coil | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0007389 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009734 | GO:GO:0009738 | GO:GO:0009743 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010154 | GO:GO:0031540 | GO:GO:0035198 | GO:GO:0040007 |
| GO:GO:0048366 | GO:GO:0048441 | GO:GO:0048442 | GO:GO:0048589 | GO:GO:0048829 | GO:GO:0051301 |
| InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | RefSeq:NP_001324968.1 | RefSeq:NP_180402.1 | ProteinID:OAP07847.1 |
| InterPro:PB1_dom | PFAM:PF02362 | PFAM:PF06507 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007015 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020031 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF27 |
| UniProt:Q9SKN5 | SMART:SM01019 | SUPFAM:SSF101936 | UniParc:UPI00000AA51B | SEG:seg | : |
Description
ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
Coordinates
chr2:+:12113889..12116942
Molecular Weight (calculated)
76725.1 Da
IEP (calculated)
7.794
GRAVY (calculated)
-0.384
Length
693 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.