Factsheet for Solyc11g069500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g096070.2.1
Solyc03g121060.2.1
Solyc04g081240.2.1
Solyc06g075150.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc11g069190.1.1
Solyc11g069500.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT2G28350.1	Solyc08g008380.2.1	AT1G34310.1	22096563
AT2G28350.1	Solyc08g082630.2.1	AT1G34310.1	22096563
AT2G28350.1	Solyc06g075150.2.1	AT2G28350.1	22096563
AT2G28350.1	Solyc11g069500.1.1	AT2G28350.1	22096563
AT2G28350.1	Solyc03g121060.2.1	AT3G16500.1	21734647
AT2G28350.1	Solyc01g096070.2.1	AT3G61830.1	22096563
AT2G28350.1	Solyc11g069190.1.1	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020874	Potato	nucleus	96.71	96.71
VIT_06s0004g02750.t01	Wine grape	nucleus	71.67	70.46
Solyc06g075150.2.1	Tomato	nucleus	66.52	69.3
KRH22880	Soybean	nucleus	64.81	67.61
GSMUA_Achr8P18930_001	Banana	nucleus	54.65	66.67
GSMUA_Achr4P18240_001	Banana	nucleus	57.51	66.23
KRH26435	Soybean	nucleus	65.81	65.71
GSMUA_Achr5P14630_001	Banana	nucleus	50.93	64.61
GSMUA_Achr11P...	Banana	nucleus	49.93	64.51
GSMUA_Achr5P18540_001	Banana	nucleus	47.5	63.97
KRH29907	Soybean	nucleus	63.52	63.7
KRH25023	Soybean	nucleus	63.66	63.48
GSMUA_Achr5P03960_001	Banana	nucleus	50.64	63.33
Solyc09g007810.2.1	Tomato	nucleus	62.8	63.26
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	10.01	62.5
GSMUA_Achr11P...	Banana	nucleus	53.79	62.25
Zm00001d014013_P002	Maize	nucleus	57.08	61.96
TraesCS1A01G156600.1	Wheat	nucleus	59.51	60.47
TraesCS1D01G155100.1	Wheat	nucleus	59.51	60.47
EER94066	Sorghum	nucleus	59.51	60.38
TraesCS1B01G173700.1	Wheat	nucleus	59.66	60.35
CDY15734	Canola	nucleus	58.66	60.29
HORVU1Hr1G041770.1	Barley	nucleus	59.23	60.17
Zm00001d032683_P001	Maize	nucleus	58.51	60.06
CDY04557	Canola	nucleus	58.66	59.85
Os10t0479900-01	Rice	nucleus	59.37	59.46
TraesCS7B01G346700.1	Wheat	nucleus	58.94	59.37
Bra011955.1-P	Field mustard	nucleus	59.66	59.15
Os06t0685700-01	Rice	nucleus	59.23	59.14
TraesCS7D01G436800.1	Wheat	nucleus	58.66	58.99
HORVU7Hr1G101270.1	Barley	nucleus	58.8	58.97
AT2G28350.1	Thale cress	nucleus	58.37	58.87
TraesCS7A01G446900.1	Wheat	nucleus	58.66	58.49
EER88840	Sorghum	nucleus	58.8	57.97
Os02t0628600-01	Rice	nucleus	54.79	56.24
Zm00001d014507_P002	Maize	nucleus	58.23	56.14
Zm00001d000358_P001	Maize	nucleus	56.08	56.0
Os04t0519700-01	Rice	nucleus	31.04	55.36
HORVU3Hr1G081710.1	Barley	cytosol	8.3	55.24
HORVU5Hr1G024100.1	Barley	cytosol	11.87	54.97
EES05458	Sorghum	nucleus	55.08	54.38
Zm00001d017284_P001	Maize	nucleus	54.36	53.75
TraesCS6A01G222300.1	Wheat	nucleus	51.36	53.42
Zm00001d051172_P001	Maize	nucleus	52.36	51.48
TraesCS2B01G397300.1	Wheat	nucleus	50.5	49.86
TraesCS2D01G376600.1	Wheat	nucleus	50.79	49.72
TraesCS6B01G258800.1	Wheat	mitochondrion	53.08	49.67
HORVU6Hr1G058890.2	Barley	mitochondrion	52.65	48.48
HORVU2Hr1G089670.1	Barley	nucleus	49.21	48.45
Solyc10g086130.1.1	Tomato	nucleus	43.63	48.34
TraesCS6D01G212700.1	Wheat	plastid	52.79	47.98
Solyc11g013480.1.1	Tomato	nucleus	23.32	47.66
KXG36152	Sorghum	nucleus	42.49	44.8
KXG26729	Sorghum	nucleus, plastid	44.92	43.49
TraesCS2A01G380300.1	Wheat	nucleus	24.89	43.07
Zm00001d025871_P001	Maize	nucleus	34.33	40.82
HORVU7Hr1G021880.1	Barley	nucleus	11.59	36.65
HORVU2Hr1G089660.8	Barley	nucleus	12.73	27.38
Solyc02g077560.2.1	Tomato	nucleus	27.47	25.7
Solyc11g013470.1.1	Tomato	cytosol, nucleus, vacuole	10.59	21.83
Solyc05g056040.2.1	Tomato	nucleus	17.6	18.92

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:Auxin_resp	InterPro:B3_DNA-bd
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	UniProt:K4DAA6	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF27	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc11g069500.1
EnsemblPlants:Solyc11g069500.1.1	UniParc:UPI000276AAC2	SEG:seg	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4DAA6]

Coordinates

chr11:-:54104934..54108069

Molecular Weight (calculated)

76994.4 Da

IEP (calculated)

8.249

GRAVY (calculated)

-0.334

Length

699 amino acids

Sequence
(BLAST)

001: MKEVLEKCVD SQLWHACAGG MVQIPPVNSK VYYFPQGHAE HTLMNVDFSA LPRSPALILC RVAAVKFLAD PETDEVYAKI RVVPVGNKGN DFDDDDDILG
101: SNESGTAEKP NSFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVTAKDVHG ESWKFRHIYR GTPRRHLLTT GWSSFVNQKK LVAGDSIVFL
201: RAENGELCVG IRRAKRGGIG GPEAPSGWNS GAGNYGGFSA FLREEMSKNG NLTSPTRSLR GKGRVRPESV VEAAYLASSG QPFEVVYYPR ANTPEFCVRA
301: SSVNAAMRIQ WCSGMRFKMA FETEDSSRIS WFMGTISSIQ LADPIRWPNS PWRLLQVAWD EPDLLQNVKH VSPWLVELVS NMPVIHLSPF SPPRKKLRLP
401: PDFSLDSQFQ LPSFSGNPLR SSSPFCCLSD NITAGIQGAR HAQFGVPLLD LHLSNKLPSG LLPPSFQRVA ANSQLPNVIN KCQNDRNDNI SCLLTMGTSS
501: KTLDKNDSVN TPRFLLFGQP ILTEQQISNG CSVSAPQVVQ TGKDLGRIQP INEKHPSEQK GSIQDNLSSA TFFWNRGYHA AELGVLNTGH CKVFLESEDV
601: GRTLDLSVMG SYEELYKRLA NMFGLERPDM LTRVLYHDAT GAVKHTGDEP FSDFVKSAKR LTILMNSSSN IKRKWLTGLA TAERGLDSSN QAGPLSIFA

Best Arabidopsis Sequence Match ( AT2G28350.1 )
(BLAST)

001: MEQEKSLDPQ LWHACAGSMV QIPSLNSTVF YFAQGHTEHA HAPPDFHAPR VPPLILCRVV SVKFLADAET DEVFAKITLL PLPGNDLDLE NDAVLGLTPP
101: SSDGNGNGKE KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSAEP PVQTVIAKDI HGETWKFRHI YRGTPRRHLL TTGWSTFVNQ KKLIAGDSIV
201: FLRSESGDLC VGIRRAKRGG LGSNAGSDNP YPGFSGFLRD DESTTTTSKL MMMKRNGNND GNAAATGRVR VEAVAEAVAR AACGQAFEVV YYPRASTPEF
301: CVKAADVRSA MRIRWCSGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR WPNSPWRLLQ VAWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LSPFSPRKKI
401: RIPQPFEFPF HGTKFPIFSP GFANNGGGES MCYLSNDNNN APAGIQGARQ AQQLFGSPSP SLLSDLNLSS YTGNNKLHSP AMFLSSFNPR HHHYQARDSE
501: NSNNISCSLT MGNPAMVQDK KKSVGSVKTH QFVLFGQPIL TEQQVMNRKR FLEEEAEAEE EKGLVARGLT WNYSLQGLET GHCKVFMESE DVGRTLDLSV
601: IGSYQELYRK LAEMFHIEER SDLLTHVVYR DANGVIKRIG DEPFSDFMKA TKRLTIKMDI GGDNVRKTWI TGIRTGENGI DASTKTGPLS IFA

Arabidopsis Description

ARF10Auxin response factor (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.