Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G026750.1 | Barley | cytosol, nucleus, plastid | 9.44 | 16.49 |
| PGSC0003DMT400045323 | Potato | cytosol | 10.32 | 13.06 |
| Solyc09g007810.2.1 | Tomato | nucleus | 24.78 | 12.1 |
| Solyc11g069500.1.1 | Tomato | nucleus | 21.83 | 10.59 |
| Solyc10g086130.1.1 | Tomato | nucleus | 19.47 | 10.46 |
| Solyc06g075150.2.1 | Tomato | nucleus | 19.76 | 9.99 |
| Solyc11g013480.1.1 | Tomato | nucleus | 8.26 | 8.19 |
| Zm00001d003011_P001 | Maize | nucleus | 4.72 | 7.96 |
| Solyc02g077560.2.1 | Tomato | nucleus | 17.4 | 7.9 |
| Solyc05g056040.2.1 | Tomato | nucleus | 12.09 | 6.31 |
Protein Annotations
| EnsemblPlants:Solyc11g013470.1.1 | EnsemblPlantsGene:Solyc11g013470.1 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF10 | SEG:seg | UniParc:UPI000276A444 |
| UniProt:K4D6F1 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:6496469..6499311
Molecular Weight (calculated)
36850.5 Da
IEP (calculated)
4.548
GRAVY (calculated)
-0.285
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQPDLMTTL NPLFFLSHGD VFFPLFLYNK KALPPLSILC VLLDFDMLNH APPPPTFITW EEPEVPQHAN RVNPWQVECF PPIPQFLPPS KKIKLPNGLL
101: PDGERSPFPM TGLGSFPMTG LGNFPMTGLG NFPMTGLGSF PMTGLGSFHM TGLGSFPMTG LGNSTIGLSS PSLGNFTSFP AGMQGARHDQ VSVSSLSNVK
201: SNNLGLCTNN SLDEEIKAKL DSVSPKLNIG SSYSDNLSLD SQSSVHFGDN ELITKPGSSS FTKDRFSTFQ LFGKVIHVER VEGALDGFGF SESDNVEVYK
301: EIDDPSNSDV SPNKDDPSNS DVSPNKPFKL FDNPDVQHE
101: PDGERSPFPM TGLGSFPMTG LGNFPMTGLG NFPMTGLGSF PMTGLGSFHM TGLGSFPMTG LGNSTIGLSS PSLGNFTSFP AGMQGARHDQ VSVSSLSNVK
201: SNNLGLCTNN SLDEEIKAKL DSVSPKLNIG SSYSDNLSLD SQSSVHFGDN ELITKPGSSS FTKDRFSTFQ LFGKVIHVER VEGALDGFGF SESDNVEVYK
301: EIDDPSNSDV SPNKDDPSNS DVSPNKPFKL FDNPDVQHE
001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG
Arabidopsis Description
ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.