Factsheet for Zm00001d003011_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053166_P001	Maize	nucleus	28.36	38.51
Zm00001d006004_P001	Maize	nucleus	30.85	18.4
Zm00001d025871_P001	Maize	nucleus	52.24	17.86
Zm00001d030803_P001	Maize	nucleus	27.86	16.47
Zm00001d002929_P001	Maize	nucleus	39.8	15.59
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	21.39	15.3
Zm00001d026687_P001	Maize	nucleus	33.33	14.5
Zm00001d017284_P001	Maize	nucleus	49.25	14.0
Zm00001d051172_P001	Maize	nucleus	49.25	13.92
Zm00001d014013_P002	Maize	nucleus	44.28	13.82
Zm00001d000358_P001	Maize	nucleus	46.27	13.29
Zm00001d014507_P002	Maize	nucleus	46.77	12.97
Zm00001d032683_P001	Maize	nucleus	43.78	12.92
Zm00001d030801_P001	Maize	nucleus	27.86	12.56
Zm00001d026694_P001	Maize	nucleus	20.9	11.48
Zm00001d043922_P001	Maize	nucleus	32.84	9.32
Zm00001d012731_P010	Maize	nucleus	30.85	8.99
Zm00001d038698_P001	Maize	nucleus	29.85	8.82
Zm00001d039006_P007	Maize	nucleus	33.33	8.72
Zm00001d043431_P012	Maize	nucleus	29.85	8.67
Solyc11g013470.1.1	Tomato	cytosol, nucleus, vacuole	7.96	4.72
HORVU6Hr1G026750.1	Barley	cytosol, nucleus, plastid	0.0	0.0
PGSC0003DMT400045323	Potato	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.40.330.10	UniProt:A0A1D6E5Y1	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	ProteinID:ONM15873.1	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF37	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI000844176C	EnsemblPlantsGene:Zm00001d003011	EnsemblPlants:Zm00001d003011_P001	EnsemblPlants:Zm00001d003011_T001	SEG:seg	:

Description

ARF-transcription factor 6Auxin response factor 16

Coordinates

chr2:-:29384400..29385005

Molecular Weight (calculated)

21929.1 Da

IEP (calculated)

8.651

GRAVY (calculated)

-0.142

Length

201 amino acids

Sequence
(BLAST)

001: MSEGSRSARD GQQHQQPRPV SFTKVLTASD ANNGDVFSVL ANCAKAVFPE LDYSLGTPKQ FVCVRDVHGV EWMFCHIWRG SPKRHLLTAG WNNFVNTKKL
101: RFGDSVVFMR EEDSKIHVGL RRTNRLFGAM QGNGGGPAGA VVGPSDGKVS TEDVVAAARL AGAGLWFEVV YYPHVASSEF CVSVAAVKES MQVPWFPGLQ
201: L

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.