Factsheet for Zm00001d014013_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000358_P001
Zm00001d001945_P002
Zm00001d004894_P001
Zm00001d008201_P001
Zm00001d010360_P001
Zm00001d014013_P002
Zm00001d014507_P002
Zm00001d016277_P002
Zm00001d017284_P001
Zm00001d025871_P001
Zm00001d026540_P002
Zm00001d032683_P001
Zm00001d037691_P003
Zm00001d038784_P001
Zm00001d039267_P005
Zm00001d039513_P001
Zm00001d040541_P001
Zm00001d043515_P002
Zm00001d051172_P001
Zm00001d052595_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Zm00001d001945_P002	AT1G19850.1	22096563
AT2G28350.1	Zm00001d026540_P002	AT1G19850.1	22096563
AT2G28350.1	Zm00001d039267_P005	AT1G34310.1	22096563
AT2G28350.1	Zm00001d000358_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d014013_P002	AT2G28350.1	22096563
AT2G28350.1	Zm00001d014507_P002	AT2G28350.1	22096563
AT2G28350.1	Zm00001d017284_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d025871_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d032683_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d051172_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d010360_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d016277_P002	AT3G16500.1	21734647
AT2G28350.1	Zm00001d037691_P003	AT3G16500.1	21734647
AT2G28350.1	Zm00001d038784_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d039513_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d043515_P002	AT3G16500.1	21734647
AT2G28350.1	Zm00001d039267_P005	AT3G61830.1	22096563
AT2G28350.1	Zm00001d010360_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d016277_P002	AT5G25890.1	22096563
AT2G28350.1	Zm00001d037691_P003	AT5G25890.1	22096563
AT2G28350.1	Zm00001d038784_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d039513_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d043515_P002	AT5G25890.1	22096563
AT4G30080.1	Zm00001d008201_P001	AT3G17600.1	21798944
AT4G30080.1	Zm00001d040541_P001	AT3G17600.1	21798944
AT4G30080.1	Zm00001d004894_P001	AT5G38420.1	21798944
AT4G30080.1	Zm00001d052595_P001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94066	Sorghum	nucleus	91.15	85.2
Zm00001d032683_P001	Maize	nucleus	88.2	83.41
TraesCS1A01G156600.1	Wheat	nucleus	83.07	77.76
TraesCS1D01G155100.1	Wheat	nucleus	82.92	77.62
TraesCS1B01G173700.1	Wheat	nucleus	82.92	77.28
HORVU1Hr1G041770.1	Barley	nucleus	82.45	77.18
Os10t0479900-01	Rice	nucleus	79.5	73.35
GSMUA_Achr4P18240_001	Banana	nucleus	61.8	65.57
GSMUA_Achr8P18930_001	Banana	nucleus	58.23	65.44
GSMUA_Achr5P18540_001	Banana	nucleus	51.71	64.16
GSMUA_Achr11P...	Banana	nucleus	53.11	63.22
GSMUA_Achr5P03960_001	Banana	nucleus	54.04	62.25
GSMUA_Achr11P...	Banana	nucleus	58.39	62.25
GSMUA_Achr5P14630_001	Banana	nucleus	52.95	61.89
VIT_06s0004g02750.t01	Wine grape	nucleus	64.29	58.23
VIT_13s0019g04380.t01	Wine grape	nucleus	61.02	57.88
VIT_08s0040g01810.t01	Wine grape	nucleus	55.75	57.62
KRH25023	Soybean	nucleus	62.42	57.35
KRH29907	Soybean	nucleus	61.96	57.25
CDX68620	Canola	nucleus	54.81	57.21
Solyc11g069500.1.1	Tomato	nucleus	61.96	57.08
PGSC0003DMT400020874	Potato	nucleus	61.96	57.08
KRH22880	Soybean	nucleus	59.32	57.01
CDY43553	Canola	nucleus	54.04	56.96
PGSC0003DMT400055522	Potato	nucleus	60.87	56.65
Solyc09g007810.2.1	Tomato	nucleus	60.71	56.34
KRH26435	Soybean	nucleus	61.18	56.29
Zm00001d000358_P001	Maize	nucleus	60.87	56.0
Bra011162.1-P	Field mustard	nucleus	55.9	55.64
Zm00001d014507_P002	Maize	nucleus	61.65	54.76
AT4G30080.1	Thale cress	nucleus	56.06	53.88
KRH32480	Soybean	nucleus	57.92	53.29
CDY15734	Canola	nucleus	56.21	53.24
Solyc06g075150.2.1	Tomato	nucleus	55.28	53.06
PGSC0003DMT400062489	Potato	nucleus	55.59	52.96
CDY04557	Canola	nucleus	56.06	52.7
KRG95987	Soybean	nucleus	57.14	52.57
AT2G28350.1	Thale cress	nucleus	56.37	52.38
Zm00001d017284_P001	Maize	nucleus	56.83	51.77
Bra011955.1-P	Field mustard	nucleus	56.52	51.63
KRG91907	Soybean	nucleus	47.36	51.43
KRH34867	Soybean	nucleus	48.29	50.82
Zm00001d051172_P001	Maize	nucleus	55.9	50.63
Zm00001d053166_P001	Maize	nucleus	11.34	49.32
Bra024109.1-P	Field mustard	nucleus	51.86	48.13
Solyc10g086130.1.1	Tomato	nucleus	43.63	44.53
Zm00001d003011_P001	Maize	nucleus	13.82	44.28
CDY46728	Canola	nucleus	55.9	42.65
Zm00001d025871_P001	Maize	nucleus	38.51	42.18
CDY30172	Canola	nucleus	52.17	40.48
Zm00001d002929_P001	Maize	nucleus	28.11	35.28
Zm00001d026687_P001	Maize	nucleus	23.45	32.68
Zm00001d026694_P001	Maize	nucleus	18.17	31.97
Zm00001d030803_P001	Maize	nucleus	16.61	31.47
Zm00001d030801_P001	Maize	nucleus	20.19	29.15
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	11.02	25.27
Zm00001d006004_P001	Maize	nucleus	13.04	24.93
Zm00001d043922_P001	Maize	nucleus	27.02	24.58
Zm00001d038698_P001	Maize	nucleus	25.62	24.26
Zm00001d012731_P010	Maize	nucleus	25.16	23.48
Zm00001d043431_P012	Maize	nucleus	25.16	23.41
Zm00001d039006_P007	Maize	nucleus	27.8	23.31

Protein Annotations

EntrezGene:100272511	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:ADG43151.1
ProteinID:AQK65042.1	InterPro:Auxin_resp	InterPro:B3_DNA-bd	UniProt:D9HNU4	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF36
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0001DC14BE	EnsemblPlantsGene:Zm00001d014013	EnsemblPlants:Zm00001d014013_P002	EnsemblPlants:Zm00001d014013_T002
SEG:seg	:	:	:	:	:

Description

ARF-transcription factor 17Auxin response factor 16

Coordinates

chr5:-:28635046..28639671

Molecular Weight (calculated)

70968.0 Da

IEP (calculated)

6.968

GRAVY (calculated)

-0.286

Length

644 amino acids

Sequence
(BLAST)

001: MKEAGEERCL DPQLWHACAG GMVQMPPVRS RVYYFPQGHA EHAHGGGGAT DLAGARARPL PPLVLCTVAG VRFLADPETD EVFAKIRLVP AAPGEVEFGE
101: PREFGIDPED AREKLSSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIFRGTPRR HLLTTGWSAF VNQKKLVAGD
201: SIVFLRTEHG ELCVGIRRAK RVSCGGMECI SGWNAPVYGA LSAFLKDEEG KITKGPGGYM RGRGKVEITD VVEAASLAAS GQPFEVVYYP RASTPEFVVK
301: AASVQNAMRN QWCPGMRFKM AFETEDSSRI SWFMGTIASA QVADTIRWPN SPWRLLQVSW DEPDLLQNVK CVNPWLVEIV SSIPPIHLGT FSPPRKKLRV
401: AQHPDFPFEG QLLNPIFHGN PLGPSNSPLR CFSDIAPAGI QGARHAQFGL PLTDYQLNQL HLGFNRLGAM TPTPRISKGF VISSAPASES VSCLLTIGTP
501: QATEKSDDIK RPHIMLFGKP ILTEQQMDSG GSREGLSQDR KASELGLEDG HCKVFMESED VGRTIDLSVF GSYEELYGQL ADMFGIEKAE IMRHLCYRDA
601: AGAVRHTGEE PFNDFMKVAR RLTIIEGTEG RPQKPLVEYM VERA

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.