CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67402
CDX74525
CDX74532
CDX82361
CDX92140
CDX95843
CDX99682
CDY01665
CDY01671
CDY46058
CDY46895
CDY52468
CDY67657
CDY71122
CDY71609

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30080.1	CDX82361	AT3G17600.1	21798944
AT4G30080.1	CDX92140	AT3G17600.1	21798944
AT4G30080.1	CDX95843	AT3G17600.1	21798944
AT4G30080.1	CDY46058	AT3G17600.1	21798944
AT4G30080.1	CDY46895	AT3G17600.1	21798944
AT4G30080.1	CDY71609	AT3G17600.1	21798944
AT4G30080.1	CDX67402	AT5G38420.1	21798944
AT4G30080.1	CDX74525	AT5G38420.1	21798944
AT4G30080.1	CDX74532	AT5G38420.1	21798944
AT4G30080.1	CDX99682	AT5G38420.1	21798944
AT4G30080.1	CDY01665	AT5G38420.1	21798944
AT4G30080.1	CDY01671	AT5G38420.1	21798944
AT4G30080.1	CDY52468	AT5G38420.1	21798944
AT4G30080.1	CDY67657	AT5G38420.1	21798944
AT4G30080.1	CDY71122	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43553	Canola	nucleus	95.3	96.24
Bra011162.1-P	Field mustard	nucleus	96.6	92.12
AT4G30080.1	Thale cress	nucleus	91.57	84.33
CDY46728	Canola	nucleus	88.98	65.05
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	11.51	63.39
CDY30172	Canola	nucleus	83.79	62.29
GSMUA_Achr4P18240_001	Banana	nucleus	58.83	59.8
GSMUA_Achr8P18930_001	Banana	nucleus	55.43	59.69
VIT_13s0019g04380.t01	Wine grape	nucleus	64.83	58.91
GSMUA_Achr11P...	Banana	nucleus	50.57	57.67
GSMUA_Achr5P14630_001	Banana	nucleus	50.89	56.99
GSMUA_Achr5P18540_001	Banana	nucleus	47.81	56.84
GSMUA_Achr5P03960_001	Banana	nucleus	51.05	56.35
HORVU5Hr1G024100.1	Barley	cytosol	13.78	56.29
GSMUA_Achr11P...	Banana	nucleus	53.97	55.13
Zm00001d014013_P002	Maize	nucleus	57.21	54.81
HORVU3Hr1G081710.1	Barley	cytosol	9.24	54.29
Os06t0685700-01	Rice	nucleus	60.45	53.29
EER88840	Sorghum	nucleus	60.78	52.89
Os04t0519700-01	Rice	nucleus	33.55	52.81
TraesCS7B01G346700.1	Wheat	nucleus	59.32	52.74
EER94066	Sorghum	nucleus	58.83	52.69
KRG91907	Soybean	nucleus	50.41	52.45
TraesCS7D01G436800.1	Wheat	nucleus	59.0	52.37
Zm00001d032683_P001	Maize	nucleus	57.54	52.13
TraesCS1A01G156600.1	Wheat	nucleus	58.02	52.03
TraesCS1D01G155100.1	Wheat	nucleus	57.86	51.89
TraesCS1B01G173700.1	Wheat	nucleus	58.02	51.81
KRH34867	Soybean	nucleus	51.38	51.8
HORVU1Hr1G041770.1	Barley	nucleus	57.7	51.74
HORVU7Hr1G101270.1	Barley	nucleus	58.35	51.65
TraesCS7A01G446900.1	Wheat	nucleus	58.51	51.5
Os02t0628600-01	Rice	nucleus	56.56	51.25
CDY15734	Canola	nucleus	56.24	51.03
Os10t0479900-01	Rice	nucleus	57.7	51.0
Zm00001d000358_P001	Maize	nucleus	57.86	51.0
Zm00001d014507_P002	Maize	nucleus	59.81	50.9
CDY04557	Canola	nucleus	56.4	50.8
EES05458	Sorghum	nucleus	56.56	49.29
Zm00001d017284_P001	Maize	nucleus	55.75	48.66
TraesCS6A01G222300.1	Wheat	nucleus	52.67	48.36
Zm00001d051172_P001	Maize	nucleus	54.46	47.26
TraesCS2B01G397300.1	Wheat	nucleus	53.48	46.61
TraesCS2D01G376600.1	Wheat	nucleus	53.48	46.22
HORVU2Hr1G089670.1	Barley	nucleus	52.51	45.63
TraesCS6B01G258800.1	Wheat	mitochondrion	54.78	45.25
HORVU6Hr1G058890.2	Barley	mitochondrion	55.11	44.8
TraesCS6D01G212700.1	Wheat	plastid	54.78	43.95
KXG36152	Sorghum	nucleus	45.87	42.68
KXG26729	Sorghum	nucleus, plastid	48.14	41.14
CDX81024	Canola	cytosol	4.54	40.58
TraesCS2A01G380300.1	Wheat	nucleus	26.26	40.1
Zm00001d025871_P001	Maize	nucleus	36.14	37.93
CDX88392	Canola	nucleus	32.58	37.92
CDX79239	Canola	nucleus	32.58	36.95
CDX68039	Canola	nucleus	32.58	36.88
HORVU7Hr1G021880.1	Barley	nucleus	12.64	35.29
CDX83839	Canola	mitochondrion	5.19	30.48
CDY37679	Canola	nucleus	25.93	26.94
CDY17209	Canola	nucleus	25.45	26.08
CDY27929	Canola	nucleus	25.28	25.66
HORVU2Hr1G089660.8	Barley	nucleus	13.13	24.92

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078BV28	InterPro:Auxin_resp
InterPro:B3_DNA-bd	EnsemblPlants:CDX68620	ProteinID:CDX68620	ProteinID:CDX68620.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00130264001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EF40E3	SEG:seg	:	:

Description

BnaC01g08330D

Coordinates

chrLK031789:-:210258..213457

Molecular Weight (calculated)

68187.2 Da

IEP (calculated)

7.755

GRAVY (calculated)

-0.392

Length

617 amino acids

Sequence
(BLAST)

001: MINVMNPMRS GSEKGLDPQL WHACGGGMVR MPPMNSKVFY FPQGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADPESD EVFAKLKLIP LKDNDHEYRE
101: GEDSNGLESN NSEKTPSFAK TLTQSDANNG GGFSVPRYCA EMIFPRLDYN AEPPVQTILA KDVHGEVWKF RHIYRGTPRR HLLTTGWSNF VNQKKLVAGD
201: SIVFMRAENG DLCVGIRRAK RGGIGNNGVE KGKVTAESVV EAASLAISGR AFEVVYYPRA SSSEFCVKAL DARAAMRIPW CSGMRFKMAF ETEDSSRISW
301: FMGTVSAVSV SDPVRWPNSP WRLLQVAWDE PDLLQNVKRV NPWLVELVSN VHPIVPSFSP PRKKMRLPQH SDYNARISVP SFASNPLIRS SPLSSVLDNV
401: PVGLQGARHN AHQYYGLSSS DLHHYYLNRP HPPPPPPTLT VPPPLGFRNI DSKNEKGFCF LTMGTTPCND TESKKSHIVL FGKLILPEEQ KGSEKTQISS
501: GGSNQNCVGG SSSDEGSPCS NKAHDGLGLE TGHCKVFMES DDVGRTLDLS VLGSYEELGV KLSDMFGIQK SEMLSSVLYR DASGAVKYPG NEPFSEFLKT
601: ARRLTILSEQ GSESVVV

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.