CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015651.1-P	Field mustard	nucleus	96.6	93.77
CDX68039	Canola	nucleus	75.47	73.39
CDX79239	Canola	nucleus	74.53	72.61
AT1G77850.2	Thale cress	nucleus	71.32	63.42
KRH16622	Soybean	mitochondrion	13.58	54.55
PGSC0003DMT400071449	Potato	nucleus	31.51	46.26
Solyc11g013480.1.1	Tomato	nucleus	29.25	45.32
KRH18828	Soybean	nucleus	46.98	45.19
KRH64757	Soybean	plastid	46.98	44.31
GSMUA_Achr9P29480_001	Banana	nucleus	35.66	42.19
KRH16623	Soybean	nucleus	30.19	41.45
GSMUA_Achr6P18900_001	Banana	plastid	29.06	37.47
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	23.77	36.31
TraesCS2D01G577800.1	Wheat	nucleus	34.53	35.67
TraesCS2A01G567300.1	Wheat	nucleus	34.34	35.34
EES13156	Sorghum	nucleus	32.64	33.4
CDX81024	Canola	cytosol	4.34	33.33
GSMUA_Achr10P...	Banana	nucleus	31.13	33.0
CDX68620	Canola	nucleus	37.92	32.58
CDY43553	Canola	nucleus	37.55	32.57
Zm00001d002929_P001	Maize	nucleus	31.51	32.55
Os04t0690600-01	Rice	plastid	30.75	30.81
Zm00001d026687_P001	Maize	nucleus	26.42	30.3
CDY15734	Canola	nucleus	37.92	29.56
CDY04557	Canola	nucleus	37.92	29.34
CDX83839	Canola	mitochondrion	5.66	28.57
Zm00001d030803_P001	Maize	nucleus	18.11	28.24
Zm00001d026694_P001	Maize	nucleus	19.25	27.87
Zm00001d030801_P001	Maize	nucleus	23.02	27.35
HORVU7Hr1G108360.1	Barley	nucleus	17.17	26.92
TraesCS7D01G463000.1	Wheat	nucleus	17.17	25.71
CDY46728	Canola	nucleus	37.92	23.82
CDY37679	Canola	nucleus	25.47	22.73
TraesCS7A01G475700.1	Wheat	nucleus	15.66	22.37
CDY17209	Canola	nucleus	25.28	22.26
TraesCS7A01G475600.1	Wheat	nucleus	15.66	22.19
CDY30172	Canola	nucleus	34.72	22.17
CDY27929	Canola	nucleus	25.09	21.88
HORVU2Hr1G125740.1	Barley	nucleus	13.58	18.51
Os07t0183700-00	Rice	mitochondrion	16.6	16.79
Os07t0183350-00	Rice	extracellular	18.3	12.73
Os07t0183100-00	Rice	nucleus	5.47	8.1
Os07t0183200-01	Rice	nucleus	0.94	1.23

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	GO:A0A078DHE4	InterPro:Auxin_resp	InterPro:B3_DNA-bd
EnsemblPlants:CDX88392	ProteinID:CDX88392	ProteinID:CDX88392.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00147919001
InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF38	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004EF2897	SEG:seg	:

Description

BnaC06g38360D

Coordinates

chrLK031855:+:723637..726666

Molecular Weight (calculated)

57807.6 Da

IEP (calculated)

5.108

GRAVY (calculated)

-0.313

Length

530 amino acids

Sequence
(BLAST)

001: MSPPSAIADV HRVIDPKIWR ACAGASVQIP ALFSRVYYYP QGHVEHCCPS SSAVTTSPIA CVVSSIDLLA DPITDEVFAH LALLPVAAAA AQDQFQFPPQ
101: SRFEEDGESE KVVTFAKVLT ASDANNGGGF SVPRYCADSV FPPLDFQADP PVQKLFITDV HGGVWDFRHI YRGTPRRHLL TTGWSKFVNS KKLICGDSVV
201: FMRKSVHEMF IGVRRAPISN KSGGGSYYGD EVGMGKLTAE AVSEAIGKAS RGLPFEVVYY PTAGWSEFVV RAEDVEASTN VYWTPGTRVK MAMETEDSSR
301: ITWFQGIVSA TFQETWKQLQ QITWDEPEIL QNLKRVNPWQ VEVVTASSTQ LHATYPPPTK RPKYPHASSG VLSGEEGEMI YYGRGQQAMD PIPYGYTYTT
401: VPAGMQGARH YEFGSYNNST GFIGENAHPE FNFFSPLPGL GRVSTQVMSF GSPPSDDLSP NSNTTNVSSG NDAAGNNRCI SFQLFGKVIN VQEPAESGVA
501: ESSLCEEDGS KESSDNEVPN EAQLLGRGGR

Best Arabidopsis Sequence Match ( AT1G77850.2 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.