Factsheet for TraesCS7A01G475600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G475700.1	Wheat	nucleus	99.2	100.0
HORVU7Hr1G108360.1	Barley	nucleus	25.13	27.81
TraesCS7D01G463000.1	Wheat	nucleus	23.8	25.14
Solyc11g013480.1.1	Tomato	nucleus	20.59	22.51
KRH16622	Soybean	mitochondrion	7.49	21.21
PGSC0003DMT400071449	Potato	nucleus	19.52	20.22
TraesCS2A01G567300.1	Wheat	nucleus	27.54	20.0
GSMUA_Achr9P29480_001	Banana	nucleus	22.19	18.53
GSMUA_Achr6P18900_001	Banana	plastid	17.91	16.3
CDX88392	Canola	nucleus	22.19	15.66
KRH64757	Soybean	plastid	23.53	15.66
CDX68039	Canola	nucleus	22.73	15.6
CDX79239	Canola	nucleus	22.46	15.44
Bra003665.1-P	Field mustard	nucleus	22.46	15.38
ATMG00940.1	Thale cress	cytosol	6.68	15.24
TraesCS1A01G156600.1	Wheat	nucleus	27.81	15.12
Bra015651.1-P	Field mustard	nucleus	21.93	15.02
AT1G77850.2	Thale cress	nucleus	23.8	14.93
TraesCS6A01G222300.1	Wheat	nucleus	26.47	14.73
KRH18828	Soybean	nucleus	21.66	14.7
TraesCS7A01G446900.1	Wheat	nucleus	27.54	14.69
GSMUA_Achr10P...	Banana	nucleus	19.52	14.6
TraesCS3A01G292400.1	Wheat	nucleus	23.26	13.32
Os07t0183700-00	Rice	mitochondrion	18.45	13.17
TraesCS3A01G246000.1	Wheat	nucleus	23.26	13.06
TraesCS1A01G334900.1	Wheat	nucleus	24.06	12.73
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	11.76	12.68
TraesCS1A01G396400.1	Wheat	nucleus	24.06	12.24
KRH16623	Soybean	nucleus	11.76	11.4
Os07t0183350-00	Rice	extracellular	18.18	8.92
Os07t0183100-00	Rice	nucleus	8.29	8.66
TraesCS2A01G380300.1	Wheat	nucleus	7.49	6.93
Os07t0183200-01	Rice	nucleus	1.34	1.23

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.1	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384	PANTHER:PTHR31384:SF19	SUPFAM:SSF101936	EnsemblPlantsGene:TraesCS7A01G475600
EnsemblPlants:TraesCS7A01G475600.1	TIGR:cd10017	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7A:-:670578996..670580194

Molecular Weight (calculated)

40695.3 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.249

Length

374 amino acids

Sequence
(BLAST)

001: MSLLLGGLGG GNGDPLPALK DDAWMYAAVD LSRLPAAGTR VCYFSRGHHE QWADRLGAPP AADPTNPYAS CTIISVEVRT VAHAPYASII LSPAPDEPQG
101: GAPAPAGDLF RYAFKELTNS DVKEPRLMVR KATASIFPAF GVNQQEQDLV MFDIKSRTWN FTHVYKGGRQ MHFLRGDWAN FVAAKRAKSR NPLFLLRRVE
201: DGAFFIELRS SLDTPEAEKD RLLAPPLVLQ EEINEAAAAA AAAAPAGQGQ FQVTYYPHKE TGLFVVPRWE LDRALGVNWE TGMQVRARKL QLHPIADEIP
301: QPATGVITAV HQPISGWRSL EVCIVVWGQS STSSPTNAWD VEVVPGDNAP PLKKQKVAAP APRSGDPSTT SHVH

Best Arabidopsis Sequence Match ( AT5G62000.4 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVDGGRL VETGEQNGMM GLR

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.