Factsheet for GSMUA_Achr9P29480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18900_001	Banana	plastid	52.68	57.42
Solyc11g013480.1.1	Tomato	nucleus	33.93	44.44
GSMUA_Achr10P...	Banana	nucleus	49.33	44.2
PGSC0003DMT400071449	Potato	nucleus	35.04	43.49
KRH18828	Soybean	nucleus	47.77	38.84
KRH64757	Soybean	plastid	47.77	38.08
CDX79239	Canola	nucleus	45.76	37.68
CDX68039	Canola	nucleus	45.76	37.61
KRH16623	Soybean	nucleus	32.37	37.56
Bra003665.1-P	Field mustard	nucleus	45.76	37.55
CDX88392	Canola	nucleus	42.19	35.66
KRH16622	Soybean	mitochondrion	10.49	35.61
AT1G77850.2	Thale cress	nucleus	46.43	34.9
Bra015651.1-P	Field mustard	nucleus	42.41	34.8
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	26.34	34.01
TraesCS2D01G577800.1	Wheat	nucleus	37.72	32.94
TraesCS2A01G567300.1	Wheat	nucleus	37.28	32.43
ATMG00940.1	Thale cress	cytosol	11.83	32.32
GSMUA_Achr8P18930_001	Banana	nucleus	39.96	31.24
Zm00001d002929_P001	Maize	nucleus	35.71	31.19
EES13156	Sorghum	nucleus	35.49	30.7
GSMUA_Achr11P...	Banana	nucleus	36.83	30.5
GSMUA_Achr5P18540_001	Banana	nucleus	34.82	30.06
GSMUA_Achr4P18240_001	Banana	nucleus	40.4	29.82
GSMUA_Achr5P14630_001	Banana	nucleus	36.38	29.58
GSMUA_Achr11P...	Banana	nucleus	39.73	29.47
Os04t0690600-01	Rice	plastid	34.15	28.92
Zm00001d030803_P001	Maize	nucleus	21.88	28.82
Zm00001d026694_P001	Maize	nucleus	23.44	28.69
GSMUA_Achr5P03960_001	Banana	nucleus	35.71	28.62
Zm00001d026687_P001	Maize	nucleus	27.68	26.84
TraesCS7D01G463000.1	Wheat	nucleus	18.97	24.01
Zm00001d030801_P001	Maize	nucleus	23.66	23.77
HORVU7Hr1G108360.1	Barley	nucleus	17.86	23.67
TraesCS7A01G475700.1	Wheat	nucleus	18.53	22.37
TraesCS7A01G475600.1	Wheat	nucleus	18.53	22.19
GSMUA_Achr10P...	Banana	nucleus	26.12	20.35
GSMUA_Achr7P11000_001	Banana	nucleus	25.67	19.23
GSMUA_Achr4P10590_001	Banana	nucleus	29.46	18.49
GSMUA_Achr4P02750_001	Banana	nucleus	27.68	17.27
HORVU2Hr1G125740.1	Barley	nucleus	14.73	16.97
GSMUA_Achr7P25330_001	Banana	nucleus	27.23	16.78
Os07t0183700-00	Rice	mitochondrion	17.86	15.27
GSMUA_Achr3P31350_001	Banana	nucleus	24.33	13.75
Os07t0183350-00	Rice	extracellular	19.87	11.68
Os07t0183100-00	Rice	nucleus	5.58	6.98
Os07t0183200-01	Rice	nucleus	0.89	0.98

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G29480_001	EnsemblPlants:GSMUA_Achr9P29480_001	EnsemblPlants:GSMUA_Achr9T29480_001	InterPro:IPR003340
InterPro:IPR015300	UniProt:M0U4K5	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF38	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002960895	SEG:seg	:

Description

Putative Auxin response factor 17 [Source:GMGC_GENE;Acc:GSMUA_Achr9G29480_001]

Coordinates

chr9:+:33176099..33180923

Molecular Weight (calculated)

49211.7 Da

IEP (calculated)

9.619

GRAVY (calculated)

-0.140

Length

448 amino acids

Sequence
(BLAST)

001: MATEEEAAAP AREMPTVEPQ VWKACAGTAA RIPAVGSRVY YFPQGHAEQA GSRPDFSTLP SLFNAVLCRI SAVRLHASGG GFVSFAKILT PSDANNGGGF
101: SVPRFCADSI FPRLDFNAYP PAQFILVYDV HGNHWKFRHI YRGTPRRHLL TTGWSKFVNS KKLIAGDSVV FMRNSSGQIL VGIRRTSRFC GPGFSSNARG
201: RVPATSVVAA VRLAGMDLPF KVLYYARAGS SDFVVAAESV EVAMSVRWTT GMRVRMSVET EDSARMTWYE GRVSSVRMNS VDLWPRSPWR MLEVTWDEPE
301: ILQNVGNVSP WQVVLVSASP QIESQFSVIK RIKMLESSEF CGDREGDMLF PVTELKSTIV GSLPSSVFSY SVFPAGMQGA RHYSIGTPNL CDSIMNTNRR
401: VLNDLQGVNA LRKDDVFVEL KIGGTSQSGG SSPPSQAVWS SNPYRPTH

Best Arabidopsis Sequence Match ( AT1G77850.2 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQGIFRSL SSTIIN

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.