Factsheet for Zm00001d002929_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13156	Sorghum	nucleus	81.87	81.08
Zm00001d026687_P001	Maize	nucleus	57.7	64.07
TraesCS2D01G577800.1	Wheat	nucleus	54.78	54.78
Zm00001d030803_P001	Maize	nucleus	36.06	54.41
TraesCS2A01G567300.1	Wheat	nucleus	53.61	53.4
Zm00001d026694_P001	Maize	nucleus	36.84	51.64
Zm00001d030801_P001	Maize	nucleus	44.25	50.9
Os04t0690600-01	Rice	plastid	48.34	46.88
Zm00001d053166_P001	Maize	nucleus	11.89	41.22
Solyc11g013480.1.1	Tomato	nucleus	26.9	40.35
Zm00001d003011_P001	Maize	nucleus	15.59	39.8
PGSC0003DMT400071449	Potato	nucleus	27.1	38.5
KRH16622	Soybean	mitochondrion	9.36	36.36
GSMUA_Achr9P29480_001	Banana	nucleus	31.19	35.71
HORVU2Hr1G125740.1	Barley	nucleus	25.34	33.42
CDX79239	Canola	nucleus	33.92	31.99
Bra003665.1-P	Field mustard	nucleus	33.92	31.87
CDX68039	Canola	nucleus	33.72	31.74
CDX88392	Canola	nucleus	32.55	31.51
Bra015651.1-P	Field mustard	nucleus	33.14	31.14
KRH64757	Soybean	plastid	33.72	30.78
KRH18828	Soybean	nucleus	32.55	30.31
GSMUA_Achr6P18900_001	Banana	plastid	23.2	28.95
Zm00001d014013_P002	Maize	nucleus	35.28	28.11
GSMUA_Achr10P...	Banana	nucleus	26.51	27.2
AT1G77850.2	Thale cress	nucleus	31.58	27.18
KRH16623	Soybean	nucleus	20.08	26.68
Zm00001d025871_P001	Maize	nucleus	30.21	26.36
Zm00001d051172_P001	Maize	nucleus	36.45	26.3
Zm00001d017284_P001	Maize	nucleus	35.48	25.74
Zm00001d032683_P001	Maize	nucleus	34.11	25.7
Zm00001d014507_P002	Maize	nucleus	35.87	25.38
Zm00001d000358_P001	Maize	nucleus	34.5	25.29
VIT_18s0001g04180.t01	Wine grape	mitochondrion, nucleus	15.01	22.19
ATMG00940.1	Thale cress	cytosol	7.02	21.95
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	11.89	21.71
Zm00001d006004_P001	Maize	nucleus	13.84	21.07
Zm00001d043922_P001	Maize	nucleus	25.73	18.64
Zm00001d012731_P010	Maize	nucleus	24.95	18.55
Zm00001d043431_P012	Maize	nucleus	24.95	18.5
Zm00001d038698_P001	Maize	nucleus	24.37	18.38
Zm00001d039006_P007	Maize	nucleus	24.95	16.67

Protein Annotations

EntrezGene:100383479	MapMan:15.5.5.1	Gene3D:2.40.330.10	ProteinID:ADG43139.1	InterPro:Auxin_resp	InterPro:B3_DNA-bd
EMBL:BT067327	UniProt:C0PGA8	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	ProteinID:ONM15644.1	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PANTHER:PTHR31384
PANTHER:PTHR31384:SF19	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000195CA81	EnsemblPlantsGene:Zm00001d002929	EnsemblPlants:Zm00001d002929_P001
EnsemblPlants:Zm00001d002929_T001	SEG:seg	:	:	:	:

Description

ARF-transcription factor 5Auxin response factor 17

Coordinates

chr2:-:26786830..26791581

Molecular Weight (calculated)

55452.9 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.238

Length

513 amino acids

Sequence
(BLAST)

001: MGPQPPLHLP AANGDSIVDR DVWLACAVPL SRLPAVGAEV YYFPHGHAEQ CPAHLPAPLP APHLFPCTVA GVSLGADDET NEVFAKISLS PGPHRGPAAA
101: CRTDPTSDCP PQELSYFTKE LTQSDANNGG GFSVPRYCAD HIFPTLDFDA NPPVQKLFMR DTRGNPWQFR HIYRGTPRRH LLTTGWSRFV NAKLLVAGDI
201: VVFMRRHNGD LIVGLRRTPR YPLVFPRVGS GAGVDPDQPP PRNARARVPP QDVIEAARLA AEGRSFAVTY FPRQAAGEFI VPRDEVEGVL ATRWEPGAQV
301: RMQVMEAEDT RRTVWADGHV KSLHQNIWRA LEIDWDDSSP LSPNLSRFVN AWQVELVTHP PLPNGARICN PIASLCHGDV SYPLIGSEIQ GPPIPASMQG
401: ARHTGPCAAP SESSAVLTNR VLFPLLNPDL QMPPFTSPSD SSEILDPESA SPPNKSVRLP PAELPVQVKS IQLFGATIMV HVVRSVACGG CCEELNGAPS
501: GDATADGSVG KDV

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.