Factsheet for Zm00001d014507_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000358_P001
Zm00001d001945_P002
Zm00001d004894_P001
Zm00001d008201_P001
Zm00001d010360_P001
Zm00001d014013_P002
Zm00001d014507_P002
Zm00001d016277_P002
Zm00001d017284_P001
Zm00001d025871_P001
Zm00001d026540_P002
Zm00001d032683_P001
Zm00001d037691_P003
Zm00001d038784_P001
Zm00001d039267_P005
Zm00001d039513_P001
Zm00001d040541_P001
Zm00001d043515_P002
Zm00001d051172_P001
Zm00001d052595_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Zm00001d001945_P002	AT1G19850.1	22096563
AT2G28350.1	Zm00001d026540_P002	AT1G19850.1	22096563
AT2G28350.1	Zm00001d039267_P005	AT1G34310.1	22096563
AT2G28350.1	Zm00001d000358_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d014013_P002	AT2G28350.1	22096563
AT2G28350.1	Zm00001d014507_P002	AT2G28350.1	22096563
AT2G28350.1	Zm00001d017284_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d025871_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d032683_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d051172_P001	AT2G28350.1	22096563
AT2G28350.1	Zm00001d010360_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d016277_P002	AT3G16500.1	21734647
AT2G28350.1	Zm00001d037691_P003	AT3G16500.1	21734647
AT2G28350.1	Zm00001d038784_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d039513_P001	AT3G16500.1	21734647
AT2G28350.1	Zm00001d043515_P002	AT3G16500.1	21734647
AT2G28350.1	Zm00001d039267_P005	AT3G61830.1	22096563
AT2G28350.1	Zm00001d010360_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d016277_P002	AT5G25890.1	22096563
AT2G28350.1	Zm00001d037691_P003	AT5G25890.1	22096563
AT2G28350.1	Zm00001d038784_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d039513_P001	AT5G25890.1	22096563
AT2G28350.1	Zm00001d043515_P002	AT5G25890.1	22096563
AT4G30080.1	Zm00001d008201_P001	AT3G17600.1	21798944
AT4G30080.1	Zm00001d040541_P001	AT3G17600.1	21798944
AT4G30080.1	Zm00001d004894_P001	AT5G38420.1	21798944
AT4G30080.1	Zm00001d052595_P001	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88840	Sorghum	nucleus	86.76	88.72
Os06t0685700-01	Rice	nucleus	81.38	84.29
Zm00001d000358_P001	Maize	nucleus	79.17	82.0
TraesCS7D01G436800.1	Wheat	nucleus	78.34	81.73
TraesCS7B01G346700.1	Wheat	nucleus	77.79	81.27
TraesCS7A01G446900.1	Wheat	nucleus	77.66	80.31
HORVU7Hr1G101270.1	Barley	nucleus	76.97	80.06
GSMUA_Achr4P18240_001	Banana	nucleus	59.45	71.0
GSMUA_Achr8P18930_001	Banana	nucleus	53.66	67.89
GSMUA_Achr5P18540_001	Banana	nucleus	48.14	67.24
GSMUA_Achr11P...	Banana	nucleus	55.17	66.23
GSMUA_Achr11P...	Banana	nucleus	48.97	65.62
GSMUA_Achr5P03960_001	Banana	nucleus	50.34	65.3
GSMUA_Achr5P14630_001	Banana	nucleus	48.97	64.43
VIT_08s0040g01810.t01	Wine grape	nucleus	53.38	62.12
VIT_06s0004g02750.t01	Wine grape	nucleus	60.69	61.88
Solyc09g007810.2.1	Tomato	nucleus	59.03	61.67
Zm00001d014013_P002	Maize	nucleus	54.76	61.65
PGSC0003DMT400055522	Potato	nucleus	58.21	60.98
Zm00001d032683_P001	Maize	nucleus	57.1	60.79
CDY43553	Canola	nucleus	51.03	60.56
VIT_13s0019g04380.t01	Wine grape	nucleus	56.41	60.24
KRH25023	Soybean	nucleus	58.07	60.06
CDX68620	Canola	nucleus	50.9	59.81
KRH22880	Soybean	nucleus	55.17	59.7
KRH29907	Soybean	nucleus	56.97	59.25
KRH26435	Soybean	nucleus	57.1	59.14
KRH32480	Soybean	nucleus	56.69	58.71
Bra011162.1-P	Field mustard	nucleus	52.28	58.58
Zm00001d017284_P001	Maize	nucleus	57.1	58.56
Solyc11g069500.1.1	Tomato	nucleus	56.14	58.23
PGSC0003DMT400020874	Potato	nucleus	55.86	57.94
AT4G30080.1	Thale cress	nucleus	53.52	57.91
Zm00001d051172_P001	Maize	nucleus	55.72	56.82
KRG95987	Soybean	nucleus	54.76	56.71
CDY04557	Canola	nucleus	53.1	56.2
CDY15734	Canola	nucleus	52.69	56.18
KRG91907	Soybean	nucleus	45.52	55.65
Bra011955.1-P	Field mustard	nucleus	54.07	55.6
AT2G28350.1	Thale cress	nucleus	52.83	55.27
KRH34867	Soybean	nucleus	46.21	54.74
PGSC0003DMT400062489	Potato	nucleus	50.9	54.59
Solyc06g075150.2.1	Tomato	nucleus	50.21	54.25
Bra024109.1-P	Field mustard	nucleus	49.24	51.44
Zm00001d053166_P001	Maize	nucleus	9.66	47.3
Solyc10g086130.1.1	Tomato	nucleus	41.1	47.23
Zm00001d003011_P001	Maize	nucleus	12.97	46.77
CDY46728	Canola	nucleus	52.83	45.38
Zm00001d025871_P001	Maize	nucleus	36.55	45.07
CDY30172	Canola	nucleus	49.52	43.25
Zm00001d002929_P001	Maize	nucleus	25.38	35.87
Zm00001d026687_P001	Maize	nucleus	21.24	33.33
Zm00001d030803_P001	Maize	nucleus	15.17	32.35
Zm00001d026694_P001	Maize	nucleus	15.59	30.87
Zm00001d030801_P001	Maize	nucleus	17.79	28.92
Zm00001d043922_P001	Maize	nucleus	25.66	26.27
Zm00001d038698_P001	Maize	nucleus	23.59	25.15
Zm00001d039006_P007	Maize	nucleus	25.66	24.22
Zm00001d023704_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	9.38	24.2
Zm00001d043431_P012	Maize	nucleus	23.03	24.13
Zm00001d006004_P001	Maize	nucleus	11.17	24.04
Zm00001d012731_P010	Maize	nucleus	22.48	23.62

Protein Annotations

EntrezGene:100280136	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A1D6GTU9
ProteinID:AQK66414.1	ProteinID:AQK66415.1	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF27
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0004DEBE92	EnsemblPlantsGene:Zm00001d014507	EnsemblPlants:Zm00001d014507_P002	EnsemblPlants:Zm00001d014507_T002
SEG:seg	:	:	:	:	:

Description

ARF-transcription factor 19Auxin response factor 16

Coordinates

chr5:+:50795874..50799332

Molecular Weight (calculated)

78460.3 Da

IEP (calculated)

7.037

GRAVY (calculated)

-0.321

Length

725 amino acids

Sequence
(BLAST)

001: MITFVDSAAM ERERESDRCL DPQLWHACAG GMVQMPAVHS KVYYFPQGHA EHAQGPVDLP AGRVPALVLC RVAAVRFMAD PDTDEVFAKI RLAPVRPNEP
101: GYADDAIGAA AASGAQEDKP ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTVLAKDVHG VVWKFRHIYR GTPRRHLLTT GWSTFVNQKK
201: LVAGDSIVFM RTENGDLCVG IRRAKKGGIG GPEFMHHHHQ QPPPPQGGGY AGFSMFLRGE EDGGKMMAAA ATRGKAARVR VRPEEVVEAA NLAVSGQPFE
301: VVYYPRASTP EFCVKAGAVR AAMRTQWCPG MRFKMAFETE DSSRISWFMG TVSAVHVADP IRWPNSPWRL LQVAWDEPDL LQNVKRVSPW LVELVSNMPV
401: IHHLTATPFS PPRKKLCVPL YPELPLEGQF PAPMFHGSPL LGRGGAGGPM CYFPDGTPAG IQGARHAQFG ISLSDLHLNK LQPGLSPHGL HRQLDHGVQV
501: QVQQPRIAAG LIVGGHPAAR DDVSCLLTIG TPKSKKPPSD VKKASTAAAP QLMLFGKAIL TEQQISLGGG NVVPALAKKS PSDDDDDVAE RTVSNSDVSS
601: PGRSNQDGTS SGGGPAARAC WQEEECNNRA AGSEDDLLGH CKVFMQSEDV GRTLDLSAVA SYEELYQRLA DMFGVDKAEL TSHVFYRDDA SGALKHPGDE
701: PFSEFTKTAR RLTILTDESS DSLAR

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.