CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67402
CDX74525
CDX74532
CDX82361
CDX92140
CDX95843
CDX99682
CDY01665
CDY01671
CDY46058
CDY46895
CDY52468
CDY67657
CDY71122
CDY71609

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30080.1	CDX82361	AT3G17600.1	21798944
AT4G30080.1	CDX92140	AT3G17600.1	21798944
AT4G30080.1	CDX95843	AT3G17600.1	21798944
AT4G30080.1	CDY46058	AT3G17600.1	21798944
AT4G30080.1	CDY46895	AT3G17600.1	21798944
AT4G30080.1	CDY71609	AT3G17600.1	21798944
AT4G30080.1	CDX67402	AT5G38420.1	21798944
AT4G30080.1	CDX74525	AT5G38420.1	21798944
AT4G30080.1	CDX74532	AT5G38420.1	21798944
AT4G30080.1	CDX99682	AT5G38420.1	21798944
AT4G30080.1	CDY01665	AT5G38420.1	21798944
AT4G30080.1	CDY01671	AT5G38420.1	21798944
AT4G30080.1	CDY52468	AT5G38420.1	21798944
AT4G30080.1	CDY67657	AT5G38420.1	21798944
AT4G30080.1	CDY71122	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G30080.1	Thale cress	nucleus	72.87	91.79
CDY43553	Canola	nucleus	64.45	89.03
CDX68620	Canola	nucleus	65.05	88.98
CDY30172	Canola	nucleus	79.86	81.2
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	8.53	64.29
GSMUA_Achr4P18240_001	Banana	nucleus	44.31	61.61
VIT_13s0019g04380.t01	Wine grape	nucleus	49.17	61.12
GSMUA_Achr11P...	Banana	nucleus	38.15	59.52
GSMUA_Achr8P18930_001	Banana	nucleus	40.4	59.51
GSMUA_Achr5P18540_001	Banana	nucleus	35.55	57.8
HORVU5Hr1G024100.1	Barley	cytosol	10.31	57.62
GSMUA_Achr5P03960_001	Banana	nucleus	38.15	57.6
GSMUA_Achr5P14630_001	Banana	nucleus	37.32	57.17
HORVU3Hr1G081710.1	Barley	cytosol	7.11	57.14
GSMUA_Achr11P...	Banana	nucleus	40.17	56.13
Os06t0685700-01	Rice	nucleus	46.45	56.0
Zm00001d014013_P002	Maize	nucleus	42.65	55.9
EER88840	Sorghum	nucleus	46.21	55.01
TraesCS7B01G346700.1	Wheat	nucleus	45.14	54.9
Os04t0519700-01	Rice	nucleus	25.47	54.85
KRG91907	Soybean	nucleus	38.39	54.64
TraesCS7D01G436800.1	Wheat	nucleus	44.79	54.39
HORVU7Hr1G101270.1	Barley	nucleus	44.55	53.95
KRH34867	Soybean	nucleus	38.98	53.76
TraesCS7A01G446900.1	Wheat	nucleus	44.55	53.64
EER94066	Sorghum	nucleus	43.6	53.41
TraesCS1A01G156600.1	Wheat	nucleus	43.48	53.34
TraesCS1D01G155100.1	Wheat	nucleus	43.48	53.34
Zm00001d032683_P001	Maize	nucleus	42.89	53.16
Zm00001d000358_P001	Maize	nucleus	44.08	53.14
TraesCS1B01G173700.1	Wheat	nucleus	43.48	53.11
HORVU1Hr1G041770.1	Barley	nucleus	43.25	53.05
Zm00001d014507_P002	Maize	nucleus	45.38	52.83
Os02t0628600-01	Rice	nucleus	42.18	52.28
Os10t0479900-01	Rice	nucleus	43.01	52.01
CDY15734	Canola	nucleus	41.71	51.76
CDY04557	Canola	nucleus	41.82	51.53
EES05458	Sorghum	nucleus	42.42	50.56
Zm00001d017284_P001	Maize	nucleus	41.94	50.07
TraesCS6A01G222300.1	Wheat	nucleus	38.86	48.81
Zm00001d051172_P001	Maize	nucleus	41.11	48.8
TraesCS2B01G397300.1	Wheat	nucleus	40.17	47.88
TraesCS6B01G258800.1	Wheat	mitochondrion	42.06	47.52
TraesCS2D01G376600.1	Wheat	nucleus	40.17	47.48
HORVU6Hr1G058890.2	Barley	mitochondrion	42.54	47.3
TraesCS6D01G212700.1	Wheat	plastid	42.42	46.55
HORVU2Hr1G089670.1	Barley	nucleus	39.1	46.48
KXG36152	Sorghum	nucleus	34.24	43.59
KXG26729	Sorghum	nucleus, plastid	35.9	41.97
TraesCS2A01G380300.1	Wheat	nucleus	19.19	40.1
CDX81024	Canola	cytosol	3.2	39.13
Zm00001d025871_P001	Maize	nucleus	27.25	39.12
CDX88392	Canola	nucleus	23.82	37.92
CDX79239	Canola	nucleus	23.93	37.13
CDX68039	Canola	nucleus	23.93	37.06
HORVU7Hr1G021880.1	Barley	nucleus	9.6	36.65
CDX83839	Canola	mitochondrion	3.79	30.48
CDY37679	Canola	nucleus	18.72	26.6
CDY17209	Canola	nucleus	18.6	26.08
CDY27929	Canola	nucleus	18.48	25.66
HORVU2Hr1G089660.8	Barley	nucleus	9.6	24.92

Protein Annotations

Gene3D:1.10.8.1070	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078IBW9
UniProt:A0A078IBW9	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlants:CDY46728	ProteinID:CDY46728	ProteinID:CDY46728.1
ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00086041001
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF39	SMART:SM01019	SUPFAM:SSF101936
UniParc:UPI0004EE6C51	SEG:seg	:	:	:	:

Description

BnaC07g42330DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078IBW9]

Coordinates

chrLK032682:-:176468..183648

Molecular Weight (calculated)

94371.7 Da

IEP (calculated)

7.781

GRAVY (calculated)

-0.409

Length

844 amino acids

Sequence
(BLAST)

001: MEKFYWAPTR EDHIGVCKGI FRTDKIKDED IVTLVDQFPG QSIVEKISKR LVNSREGPSV FEQPEMTLEK LMEYGNMLVM EQENVKRVRQ ESPASLCNLR
101: CRPRLVDLHR GDGNHIRTFE KPNLSPSYTR TLFISLCTAK VNSYPILKQK LSCRIFRFSR NQEKGFLEQN LQELVSDLLL LFKVLLHLKE MINVMDPMKS
201: GSEKGLDPQL WHACAGGMVR MPPVNSKVFY FPQGHAENAY DHVDFKNLPI PPMVLCRVLA IKYMADPESD EVFAKLRLIP LKDDDHEYGD GQEGNGFESN
301: SEKTPSFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYNA EPPVQTILAK DVHGDVWKFR HIYRGTPRRH LLTTGWSNFV NQKKLVAGDS IVFMRAESGD
401: LCVGIRRAKR GGIGNGPDYS PGWNPIGGSC GYSSLLREDE SNSLRRSNCS LADRKGKVAA ESVIEAATLA LSGRGFEVVY YPRASTSEFC VKALDARAAM
501: RIPWCSGMRF KMAFETEDSS RISWFMGTVS AVSVSDPIRW LNSPWRLLQV AWDEPDLLQN VKRVNPWLVE LVSNVHPLPL TSFSPPRKKM RLPQHPDYNN
601: LINSIPVPSF PSNPLIRSNP LSSVLDNVPV GLQGARHNAH QYYGLSSSDL HHYYLNRPPP PPQPSALPLS QPLGLRNIDS RNEKGFCFLT MGTTPCNDDT
701: ESKKSHIVLF GKLILPEEQI SEKGSTDTAN TSGGSKLSSS DEGSPCSNKA HDAAGLETGH CKVFMESDDV GRTLDLSVLG SYEELSRKLS DMFGIQKAEM
801: LSSVLYRDAS GAIKYAGNEP FSEFLKTARR LTIVTEQGSE SVVV

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.