Factsheet for HORVU6Hr1G058890.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017770.6
HORVU1Hr1G028170.4
HORVU1Hr1G035720.2
HORVU1Hr1G041770.1
HORVU2Hr1G010630.1
HORVU2Hr1G010670.1
HORVU2Hr1G010690.1
HORVU2Hr1G089660.8
HORVU2Hr1G089670.1
HORVU2Hr1G109650.18
HORVU3Hr1G019750.4
HORVU3Hr1G032230.6
HORVU3Hr1G070620.5
HORVU3Hr1G081710.1
HORVU4Hr1G078490.1
HORVU5Hr1G024100.1
HORVU5Hr1G033540.2
HORVU5Hr1G038630.1
HORVU5Hr1G050990.4
HORVU5Hr1G051010.2
HORVU6Hr1G058890.2
HORVU7Hr1G021880.1
HORVU7Hr1G048050.2
HORVU7Hr1G101270.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	HORVU2Hr1G109650.18	AT1G19850.1	22096563
AT2G28350.1	HORVU3Hr1G032230.6	AT1G34310.1	22096563
AT2G28350.1	HORVU1Hr1G041770.1	AT2G28350.1	22096563
AT2G28350.1	HORVU2Hr1G089660.8	AT2G28350.1	22096563
AT2G28350.1	HORVU2Hr1G089670.1	AT2G28350.1	22096563
AT2G28350.1	HORVU3Hr1G081710.1	AT2G28350.1	22096563
AT2G28350.1	HORVU4Hr1G078490.1	AT2G28350.1	22096563
AT2G28350.1	HORVU5Hr1G024100.1	AT2G28350.1	22096563
AT2G28350.1	HORVU6Hr1G058890.2	AT2G28350.1	22096563
AT2G28350.1	HORVU7Hr1G021880.1	AT2G28350.1	22096563
AT2G28350.1	HORVU7Hr1G101270.1	AT2G28350.1	22096563
AT2G28350.1	HORVU1Hr1G028170.4	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G019750.4	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G070620.5	AT3G16500.1	21734647
AT2G28350.1	HORVU3Hr1G032230.6	AT3G61830.1	22096563
AT2G28350.1	HORVU1Hr1G028170.4	AT5G25890.1	22096563
AT2G28350.1	HORVU3Hr1G019750.4	AT5G25890.1	22096563
AT2G28350.1	HORVU3Hr1G070620.5	AT5G25890.1	22096563
AT4G30080.1	HORVU1Hr1G017770.6	AT3G17600.1	21798944
AT4G30080.1	HORVU1Hr1G035720.2	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010630.1	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010670.1	AT5G38420.1	21798944
AT4G30080.1	HORVU2Hr1G010690.1	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G033540.2	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G038630.1	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G050990.4	AT5G38420.1	21798944
AT4G30080.1	HORVU5Hr1G051010.2	AT5G38420.1	21798944
AT4G30080.1	HORVU7Hr1G048050.2	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G258800.1	Wheat	mitochondrion	92.36	93.84
TraesCS6A01G222300.1	Wheat	nucleus	81.29	91.82
TraesCS6D01G212700.1	Wheat	plastid	91.44	90.25
Os02t0628600-01	Rice	nucleus	71.41	79.59
EES05458	Sorghum	nucleus	70.62	75.71
Zm00001d017284_P001	Maize	nucleus	69.3	74.4
Zm00001d051172_P001	Maize	nucleus	68.25	72.86
HORVU4Hr1G078490.1	Barley	cytosol, nucleus, plastid	9.62	65.18
GSMUA_Achr4P18240_001	Banana	nucleus	50.2	62.77
GSMUA_Achr8P18930_001	Banana	nucleus	46.51	61.61
HORVU2Hr1G089670.1	Barley	nucleus	57.58	61.55
HORVU5Hr1G024100.1	Barley	cytosol	11.99	60.26
GSMUA_Achr11P...	Banana	nucleus	47.43	59.6
GSMUA_Achr11P...	Banana	nucleus	42.29	59.33
GSMUA_Achr5P14630_001	Banana	nucleus	42.95	59.17
GSMUA_Achr5P03960_001	Banana	nucleus	43.08	58.5
GSMUA_Achr5P18540_001	Banana	nucleus	39.92	58.38
HORVU3Hr1G081710.1	Barley	cytosol	8.04	58.1
HORVU7Hr1G101270.1	Barley	nucleus	52.96	57.68
VIT_08s0040g01810.t01	Wine grape	nucleus	45.45	55.38
CDY43553	Canola	nucleus	44.53	55.32
VIT_06s0004g02750.t01	Wine grape	nucleus	51.78	55.27
CDX68620	Canola	nucleus	44.8	55.11
VIT_13s0019g04380.t01	Wine grape	nucleus	48.88	54.64
Solyc09g007810.2.1	Tomato	nucleus	49.93	54.61
HORVU1Hr1G041770.1	Barley	nucleus	49.28	54.36
PGSC0003DMT400055522	Potato	nucleus	49.54	54.34
KRH32480	Soybean	nucleus	49.67	53.86
KRH22880	Soybean	nucleus	47.04	53.28
Bra011162.1-P	Field mustard	nucleus	45.32	53.17
Solyc11g069500.1.1	Tomato	nucleus	48.48	52.65
AT4G30080.1	Thale cress	nucleus	46.25	52.39
PGSC0003DMT400020874	Potato	nucleus	47.96	52.07
KRH26435	Soybean	nucleus	47.56	51.57
KRG95987	Soybean	nucleus	47.3	51.29
KRH29907	Soybean	nucleus	46.9	51.08
KRH25023	Soybean	nucleus	47.17	51.07
KRH34867	Soybean	nucleus	40.58	50.33
KRG91907	Soybean	nucleus	39.26	50.25
CDY15734	Canola	nucleus	44.93	50.15
CDY04557	Canola	nucleus	44.8	49.63
Solyc06g075150.2.1	Tomato	nucleus	43.87	49.63
AT2G28350.1	Thale cress	nucleus	45.06	49.35
PGSC0003DMT400062489	Potato	nucleus	43.87	49.26
Bra011955.1-P	Field mustard	nucleus	45.19	48.65
Bra024109.1-P	Field mustard	nucleus	43.74	47.84
Solyc10g086130.1.1	Tomato	nucleus	36.1	43.42
CDY46728	Canola	nucleus	47.3	42.54
HORVU6Hr1G026750.1	Barley	cytosol, nucleus, plastid	10.8	42.27
HORVU4Hr1G031990.1	Barley	cytosol	4.08	41.33
CDY30172	Canola	nucleus	44.93	41.08
HORVU7Hr1G021880.1	Barley	nucleus	11.86	40.72
HORVU4Hr1G080510.1	Barley	cytosol	5.93	40.54
HORVU5Hr1G054640.1	Barley	cytosol	5.8	39.64
HORVU6Hr1G070410.1	Barley	cytosol	4.87	37.76
HORVU1Hr1G049680.1	Barley	cytosol	4.22	29.91
HORVU7Hr1G108360.1	Barley	nucleus	13.31	29.88
HORVU2Hr1G089660.8	Barley	nucleus	12.38	28.92
HORVU3Hr1G072340.2	Barley	nucleus	22.13	24.78
HORVU1Hr1G076690.6	Barley	nucleus	22.53	24.53
HORVU1Hr1G087460.6	Barley	mitochondrion, nucleus	24.11	21.4
HORVU2Hr1G125740.1	Barley	nucleus	9.35	18.25

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A287UB96	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
EnsemblPlantsGene:HORVU6Hr1G058890	EnsemblPlants:HORVU6Hr1G058890.2	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF37
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000B463086	SEG:seg	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287UB96]

Coordinates

chrchr6H:-:386943607..386946389

Molecular Weight (calculated)

81846.2 Da

IEP (calculated)

9.143

GRAVY (calculated)

-0.300

Length

759 amino acids

Sequence
(BLAST)

001: LMNGTRKPFV VRVTAGTAPL VRCSPPLLPP IPTHRATSPS PLPENPPPRS AVGALPMITF ADLTEPPPGA ERRVDRQLWL ACAGGMCTVP PVGCSVYYFP
101: QGHAEHALGL DAGADLSAAR VPALVPCRVA AVLYMADTHT DEVFARILLA PLGDTDADGN VQDDAAVAAD GEQEKPASFA KTLTQSDANN GGGFSVPRYC
201: AETIFPRLDY AADPPVQTVI AKDVHGTAWK FRHIYRGTPR RHLLTTGWSA FVNRKKLVAG DSIVFLRGDG GDLHVGIRRA KRGFRGAEEG SLSLTGWGRY
301: YSGPMRGNAS PCTRGKVRAE DVVEAARLAG SGQPFEVVYF PRASTPEFCV RAAAVRAAMR VQWCPGMRFK MAFETEDSSR ISWFMGTVAG VQVAHPTRWP
401: QSPWRLLQVT WDEPDLLQNV KRVSPWLVEI VSSMPAMHLA SFSPPRKKSR IPAYPEFPFE GQLLYPSFPL NPMAHGNRRH HRHTGSYHPS LSPFPDCSAP
501: SGIQGARHSQ FGPFLSDLHL THLQSRLMYP GLRCHDHVSP APAPIASRIS TDLTIGSSPA RNGVSSTMPA SAKRPNDAKP PGLVLFGRTI LTEQQMSRSN
601: SAGVVSSPAA AGNSSLNWNT DKAGNASPGS GSTVVQNSGS TDNMSPERPR RCRDNSHISE LGLKPGQCKV FVESDTVGRN LDCSAMSSFE ELYGRLSETF
701: CIDGAELRSR VLYRGAAGEV KHAGDEPFSE FIKSARRLTI VTYAGSNNTG SLSAAATNL

Best Arabidopsis Sequence Match ( AT1G77850.1 )
(BLAST)

001: MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY
101: SRFGRFDGDV DDNNKVTTFA KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR RHLLTTGWSK FVNSKKLIAG
201: DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR
301: AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP
401: GGGFLSGDDG EILYPQSGLS SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV STEMMNFGSP PSDNLSPNSN
501: TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

Arabidopsis Description

ARF17auxin response factor 17 [Source:TAIR;Acc:AT1G77850]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.