Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G127400.1 | Wheat | nucleus | 82.86 | 88.26 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 81.22 | 86.52 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 80.0 | 77.78 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 52.65 | 56.33 |
| Os01t0190300-01 | Rice | nucleus | 53.88 | 55.46 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 49.8 | 49.39 |
| AT5G25890.1 | Thale cress | nucleus | 29.8 | 41.71 |
| CDX87072 | Canola | cytosol | 29.8 | 41.71 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 29.39 | 41.38 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 29.39 | 41.38 |
| Bra036557.1-P | Field mustard | nucleus | 29.39 | 41.14 |
| Bra009867.1-P | Field mustard | cytosol | 29.39 | 40.91 |
| CDX87863 | Canola | nucleus | 40.0 | 38.58 |
| Bra018938.1-P | Field mustard | nucleus | 38.78 | 37.55 |
| CDY22876 | Canola | nucleus | 38.78 | 37.55 |
| CDY33844 | Canola | nucleus | 38.78 | 37.55 |
| OQU86163 | Sorghum | golgi, plastid | 54.29 | 37.15 |
| CDY19790 | Canola | cytosol | 29.39 | 36.92 |
| PGSC0003DMT400006709 | Potato | nucleus | 42.04 | 36.4 |
| AT1G51950.1 | Thale cress | nucleus | 39.59 | 36.33 |
| CDY53439 | Canola | nucleus | 40.0 | 35.9 |
| CDY46538 | Canola | nucleus | 39.18 | 35.56 |
| Bra014303.1-P | Field mustard | nucleus | 39.18 | 35.56 |
| Solyc03g121060.2.1 | Tomato | nucleus | 41.22 | 35.19 |
| CDY43104 | Canola | nucleus | 37.96 | 34.83 |
| AT3G16500.1 | Thale cress | nucleus | 37.96 | 34.57 |
| KRH09948 | Soybean | nucleus | 44.9 | 34.38 |
| CDY34957 | Canola | nucleus | 37.55 | 34.2 |
| CDY64626 | Canola | cytosol | 37.55 | 34.2 |
| Bra021184.1-P | Field mustard | nucleus | 37.55 | 34.2 |
| Bra001634.1-P | Field mustard | nucleus | 37.96 | 34.19 |
| CDX82399 | Canola | nucleus | 37.96 | 34.19 |
| CDX75884 | Canola | cytosol | 37.14 | 33.58 |
| CDX92077 | Canola | nucleus | 37.96 | 32.63 |
| Bra022164.1-P | Field mustard | nucleus | 37.96 | 32.63 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 21.63 | 31.55 |
| KRH23388 | Soybean | nucleus | 44.08 | 31.21 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 43.27 | 30.72 |
| HORVU6Hr1G088140.2 | Barley | cytosol, mitochondrion, nucleus | 21.63 | 30.46 |
| KRH44271 | Soybean | nucleus | 38.78 | 30.35 |
| KRH47203 | Soybean | nucleus | 39.18 | 30.28 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 40.0 | 27.76 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 42.86 | 23.92 |
| HORVU6Hr1G091260.3 | Barley | nucleus | 25.31 | 22.06 |
| HORVU7Hr1G077110.10 | Barley | nucleus | 24.49 | 18.63 |
| HORVU4Hr1G016160.1 | Barley | plastid | 25.71 | 17.55 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 13.88 | 16.43 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | UniProt:A0A287KC82 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU3Hr1G019750 |
| EnsemblPlants:HORVU3Hr1G019750.4 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF45 | SUPFAM:SSF54277 | UniParc:UPI000B4851D3 | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287KC82]
Coordinates
chrchr3H:-:57412765..57416276
Molecular Weight (calculated)
25600.2 Da
IEP (calculated)
9.324
GRAVY (calculated)
-0.355
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWSGFREAA AGESGLELSL GLPAYFTKPA PPPAGAGTSA LDGLESTGAG ASARQPEGGS YKAKPAVAAA PVVGWPPVRS FRRNLAASKP SSSKEDGRAS
101: KDNDVAVRGA DEPSGRKGLF VKVNMDGVPI GRKVELKQHG SYAELSATVD NLFRSLLAAQ RDTAAAPDAI AGGEYTLVYE DDEGDRMLVG DVPWHMFIVT
201: AKRLRGLKSS DLPASSVTYG GREQEEAGGR GRPLIGLARR CKGLF
101: KDNDVAVRGA DEPSGRKGLF VKVNMDGVPI GRKVELKQHG SYAELSATVD NLFRSLLAAQ RDTAAAPDAI AGGEYTLVYE DDEGDRMLVG DVPWHMFIVT
201: AKRLRGLKSS DLPASSVTYG GREQEEAGGR GRPLIGLARR CKGLF
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.