Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G382600.1 | Wheat | nucleus | 96.62 | 98.28 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 96.62 | 97.86 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 95.78 | 97.84 |
| EER90896 | Sorghum | nucleus | 83.54 | 84.26 |
| Os03t0742900-01 | Rice | vacuole | 81.86 | 82.2 |
| Zm00001d033976_P002 | Maize | nucleus | 81.01 | 81.01 |
| Zm00001d013302_P002 | Maize | nucleus | 75.95 | 78.95 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 45.99 | 64.12 |
| CDY10694 | Canola | mitochondrion | 43.04 | 58.62 |
| PGSC0003DMT400041976 | Potato | nucleus | 52.32 | 58.22 |
| KRG92683 | Soybean | nucleus | 54.43 | 56.83 |
| Solyc06g053830.2.1 | Tomato | nucleus | 51.9 | 56.42 |
| KRH34377 | Soybean | nucleus | 55.7 | 55.23 |
| Solyc06g008590.2.1 | Tomato | nucleus | 48.1 | 54.81 |
| PGSC0003DMT400013627 | Potato | nucleus | 48.95 | 54.21 |
| Bra040398.1-P | Field mustard | nucleus | 52.32 | 53.68 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 52.32 | 53.68 |
| Bra039855.1-P | Field mustard | nucleus | 52.74 | 53.65 |
| CDY47148 | Canola | nucleus | 52.74 | 53.65 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 52.32 | 53.22 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 52.74 | 52.97 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 52.74 | 52.97 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 52.74 | 52.74 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 52.74 | 52.74 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 54.01 | 52.67 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 54.01 | 52.67 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.59 | 52.48 |
| Bra040122.1-P | Field mustard | nucleus | 49.79 | 52.44 |
| KRH32099 | Soybean | nucleus | 54.85 | 52.42 |
| CDX89832 | Canola | nucleus | 49.37 | 52.23 |
| KRG96977 | Soybean | nucleus | 50.63 | 52.17 |
| Solyc09g083290.2.1 | Tomato | nucleus | 51.9 | 52.12 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 52.32 | 52.1 |
| KRH68738 | Soybean | nucleus | 53.16 | 51.85 |
| Bra015298.1-P | Field mustard | nucleus | 48.95 | 51.79 |
| CDY18214 | Canola | nucleus | 48.95 | 51.79 |
| PGSC0003DMT400015610 | Potato | nucleus | 51.9 | 51.68 |
| Bra032520.1-P | Field mustard | nucleus | 49.37 | 51.54 |
| CDY32537 | Canola | nucleus | 49.37 | 51.32 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 51.9 | 51.25 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 51.9 | 51.25 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 51.05 | 51.05 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 48.95 | 50.88 |
| Bra030560.1-P | Field mustard | nucleus | 48.95 | 50.66 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 48.95 | 50.66 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 48.95 | 50.66 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 53.16 | 50.6 |
| AT4G14550.2 | Thale cress | nucleus | 49.79 | 50.43 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 52.32 | 50.41 |
| KRH67289 | Soybean | nucleus | 54.01 | 50.39 |
| Solyc01g097290.2.1 | Tomato | nucleus | 53.16 | 50.2 |
| KRG95616 | Soybean | nucleus | 53.16 | 50.0 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 56.54 | 48.55 |
| KRH71337 | Soybean | nucleus | 33.33 | 46.47 |
| HORVU3Hr1G031460.1 | Barley | cytosol | 43.88 | 45.22 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 43.88 | 45.02 |
| HORVU1Hr1G025670.3 | Barley | nucleus | 37.55 | 44.5 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 51.9 | 43.77 |
| CDY50750 | Canola | nucleus, plastid | 52.32 | 42.61 |
| HORVU7Hr1G084940.3 | Barley | plastid | 33.33 | 42.02 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 55.27 | 39.58 |
| HORVU0Hr1G021630.1 | Barley | cytosol, mitochondrion, nucleus | 30.38 | 39.13 |
| HORVU3Hr1G022540.7 | Barley | cytosol, nucleus | 32.49 | 35.65 |
| HORVU5Hr1G106350.2 | Barley | plastid | 32.91 | 34.67 |
| HORVU3Hr1G062160.2 | Barley | nucleus, plastid | 35.44 | 32.31 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 32.91 | 30.47 |
| CDY63072 | Canola | nucleus | 49.79 | 29.65 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 37.13 | 28.03 |
| HORVU3Hr1G088810.1 | Barley | plastid | 27.85 | 27.85 |
| HORVU1Hr1G086070.6 | Barley | plastid | 35.87 | 27.16 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A287SBC6 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G094220 |
| EnsemblPlants:HORVU5Hr1G094220.1 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF21 | SUPFAM:SSF54277 | UniParc:UPI000B465BA3 | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287SBC6]
Coordinates
chrchr5H:+:594546798..594548837
Molecular Weight (calculated)
25542.6 Da
IEP (calculated)
9.727
GRAVY (calculated)
-0.576
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGADVDVGT ELRLGLPGGG AEAAKAGKRG YEDTIDLKLT LPTGGMQEDS AGKPEPAADK AKRPAEAAAA DPEKPPAPKA QAVGWPPVRS YRRNAMTVQS
101: VKIKKEEEIE KQQPAATAAA GANGSNFVKV SMDGAPYLRK VDLKMYNTYK DLSIALHKMF STFTATGKIR HRNEGKMVEA VNGSDVVTTY EDKDGDWMLV
201: GDVPWEMFVA SCKRLRIMKG SEAIGLAPRA KDKYKNK
101: VKIKKEEEIE KQQPAATAAA GANGSNFVKV SMDGAPYLRK VDLKMYNTYK DLSIALHKMF STFTATGKIR HRNEGKMVEA VNGSDVVTTY EDKDGDWMLV
201: GDVPWEMFVA SCKRLRIMKG SEAIGLAPRA KDKYKNK
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.