Factsheet for Bra040122.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra001634.1-P
Bra001670.1-P
Bra002327.1-P
Bra002729.1-P
Bra003484.1-P
Bra007661.1-P
Bra011082.1-P
Bra012190.1-P
Bra013748.1-P
Bra014303.1-P
Bra014411.1-P
Bra015289.1-P
Bra016492.1-P
Bra018938.1-P
Bra019255.1-P
Bra020125.1-P
Bra021117.1-P
Bra021184.1-P
Bra021257.1-P
Bra022164.1-P
Bra022224.1-P
Bra024406.1-P
Bra025775.1-P
Bra026166.1-P
Bra027232.1-P
Bra028110.1-P
Bra035185.1-P
Bra037824.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04730.1	Bra015289.1-P	AT1G04100.1	21734647
AT3G04730.1	Bra026166.1-P	AT1G15050.1	21734647
AT3G04730.1	Bra012190.1-P	AT1G19850.1	21734647
AT3G04730.1	Bra016492.1-P	AT1G19850.1	21734647
AT3G04730.1	Bra025775.1-P	AT1G19850.1	21734647
AT3G04730.1	Bra014303.1-P	AT1G51950.1	21734647
AT3G04730.1	Bra018938.1-P	AT1G51950.1	21734647
AT3G04730.1	Bra035185.1-P	AT1G80390.1	21734647
AT3G04730.1	Bra040122.1-P	AT3G04730.1	21734647
AT3G04730.1	Bra040398.1-P	AT3G04730.1	21734647
AT3G04730.1	Bra001598.1-P	AT3G15540.1	21798944
AT3G04730.1	Bra021117.1-P	AT3G15540.1	21798944
AT3G04730.1	Bra027232.1-P	AT3G15540.1	21798944
AT3G04730.1	Bra001634.1-P	AT3G16500.1	21734647
AT3G04730.1	Bra021184.1-P	AT3G16500.1	21734647
AT3G04730.1	Bra022164.1-P	AT3G16500.1	21734647
AT3G04730.1	Bra001670.1-P	AT3G17600.1	21734647
AT3G04730.1	Bra021257.1-P	AT3G17600.1	21734647
AT3G04730.1	Bra022224.1-P	AT3G17600.1	21734647
AT3G04730.1	Bra003484.1-P	AT3G62100.1	21734647
AT3G04730.1	Bra007661.1-P	AT3G62100.1	21734647
AT3G04730.1	Bra014411.1-P	AT3G62100.1	21734647
AT3G04730.1	Bra039732.1-P	AT4G14560.1	9342315
AT3G04730.1	Bra013748.1-P	AT4G23980.1	21734647
AT3G04730.1	Bra019255.1-P	AT4G23980.1	21734647
AT3G04730.1	Bra011082.1-P	AT4G29080.1	21798944
AT3G04730.1	Bra002327.1-P	AT5G20730.1	21734647
AT3G04730.1	Bra020125.1-P	AT5G20730.1	21734647
AT3G04730.1	Bra028110.1-P	AT5G37020.1	21734647
AT3G04730.1	Bra002729.1-P	AT5G57420.1	21734647
AT3G04730.1	Bra024406.1-P	AT5G65670.1	21734647
AT3G04730.1	Bra037824.1-P	AT5G65670.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21111	Canola	cytosol, nucleus, plastid	99.56	94.92
AT3G04730.1	Thale cress	cytosol, nucleus, plastid	90.22	86.02
Bra040398.1-P	Field mustard	nucleus	88.0	85.71
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	63.11	58.68
Bra001900.1-P	Field mustard	cytosol, nucleus, plastid	61.78	58.65
Bra039855.1-P	Field mustard	nucleus	59.56	57.51
Bra032520.1-P	Field mustard	nucleus	57.33	56.83
Bra030560.1-P	Field mustard	nucleus	57.78	56.77
Bra015298.1-P	Field mustard	nucleus	56.0	56.25
GSMUA_Achr10P...	Banana	nucleus	59.56	55.6
GSMUA_Achr8P20610_001	Banana	nucleus	59.11	54.51
Bra026755.1-P	Field mustard	nucleus	37.78	54.49
Bra001899.1-P	Field mustard	nucleus	40.89	53.8
TraesCS5A01G058600.1	Wheat	nucleus	60.44	53.75
TraesCS5B01G058500.1	Wheat	nucleus	60.0	53.57
Bra033890.1-P	Field mustard	nucleus	40.89	53.49
Bra023771.1-P	Field mustard	nucleus	40.44	53.22
TraesCS5D01G069300.1	Wheat	nucleus	59.56	53.17
GSMUA_Achr9P10700_001	Banana	nucleus	56.89	53.11
GSMUA_Achr4P21020_001	Banana	nucleus	58.22	52.82
Bra032521.1-P	Field mustard	nucleus	42.22	52.78
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	43.56	52.69
GSMUA_Achr9P25550_001	Banana	nucleus	56.44	52.26
Os03t0633500-01	Rice	cytosol	53.78	51.93
Bra027504.1-P	Field mustard	nucleus	44.0	51.83
TraesCS5D01G392000.1	Wheat	nucleus	52.44	50.86
TraesCS5A01G382600.1	Wheat	nucleus	52.44	50.64
TraesCS5B01G381900.1	Wheat	cytosol, mitochondrion, nucleus	56.89	50.59
TraesCS5B01G386800.1	Wheat	nucleus	52.44	50.43
Bra039732.1-P	Field mustard	nucleus	38.22	50.29
EER90896	Sorghum	nucleus	52.44	50.21
HORVU5Hr1G094220.1	Barley	nucleus	52.44	49.79
EES17334	Sorghum	cytosol	61.78	49.47
HORVU5Hr1G014300.4	Barley	nucleus	60.44	49.28
OQU91311	Sorghum	cytosol, mitochondrion, nucleus	57.78	49.24
Os03t0742900-01	Rice	vacuole	51.56	49.15
Zm00001d033976_P002	Maize	nucleus	51.56	48.95
Zm00001d013302_P002	Maize	nucleus	48.89	48.25
Bra001598.1-P	Field mustard	nucleus	40.89	47.42
GSMUA_Achr4P22520_001	Banana	nucleus	52.89	47.04
Bra027232.1-P	Field mustard	nucleus	40.44	46.91
Bra037824.1-P	Field mustard	plastid	40.44	46.67
Os12t0601300-01	Rice	nucleus	57.33	46.57
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	39.56	45.18
HORVU5Hr1G093580.2	Barley	cytosol, nucleus, peroxisome	55.11	44.13
Bra024406.1-P	Field mustard	nucleus	43.56	42.06
Bra018993.1-P	Field mustard	nucleus	37.33	41.38
TraesCS5D01G388300.2	Wheat	cytosol	57.33	40.95
Bra011082.1-P	Field mustard	nucleus	52.44	40.69
Zm00001d041416_P001	Maize	nucleus	61.33	40.12
TraesCS5A01G378300.2	Wheat	cytosol, mitochondrion, nucleus	54.22	40.0
Bra030219.1-P	Field mustard	nucleus	45.33	38.35
Bra031850.1-P	Field mustard	mitochondrion	46.67	35.96

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra040122	EnsemblPlants:Bra040122.1
EnsemblPlants:Bra040122.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4FG95	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF28	SUPFAM:SSF54277	UniParc:UPI0002544EA3	SEG:seg	:

Description

AT3G04730 (E=2e-097) IAA16 | IAA16; transcription factor

Coordinates

chrA01:+:28378983..28380427

Molecular Weight (calculated)

24144.0 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.300

Length

225 amino acids

Sequence
(BLAST)

001: MINFEATELR LGLPGENHGG GMAAKNNGKR GFSETVDLKL NLSSTAMGSV SEVDLVNMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGPKP TTGDAVQATE
101: KTSGSNGATS SASIGATAAY VKVSMDGAPY LRKIDLKLYK TYQDLSDALS KMFSSFTIGS YGPQGMKDIV NEGKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLG

Best Arabidopsis Sequence Match ( AT3G04730.1 )
(BLAST)

001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS

Arabidopsis Description

IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.