Factsheet for Bra002729.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003484.1-P
Bra007661.1-P
Bra011082.1-P
Bra011162.1-P
Bra011955.1-P
Bra012190.1-P
Bra014411.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra024109.1-P
Bra025775.1-P
Bra026166.1-P
Bra027944.1-P
Bra034234.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57420.1	Bra026166.1-P	AT1G15050.1	21734647
AT5G57420.1	Bra012190.1-P	AT1G19850.1	21734647
AT5G57420.1	Bra016492.1-P	AT1G19850.1	21734647
AT5G57420.1	Bra025775.1-P	AT1G19850.1	21734647
AT5G57420.1	Bra017362.1-P	AT1G35240.1	21734647
AT5G57420.1	Bra018124.1-P	AT1G35240.1	21734647
AT5G57420.1	Bra027944.1-P	AT1G35240.1	21734647
AT5G57420.1	Bra034234.1-P	AT1G35240.1	21734647
AT5G57420.1	Bra011955.1-P	AT2G28350.1	21734647
AT5G57420.1	Bra003484.1-P	AT3G62100.1	21734647
AT5G57420.1	Bra007661.1-P	AT3G62100.1	21734647
AT5G57420.1	Bra014411.1-P	AT3G62100.1	21734647
AT5G57420.1	Bra011082.1-P	AT4G29080.1	21734647
AT5G57420.1	Bra011162.1-P	AT4G30080.1	21734647
AT5G57420.1	Bra024109.1-P	AT4G30080.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25909	Canola	nucleus, plastid	84.38	77.59
CDY38297	Canola	nucleus, plastid	85.62	76.11
AT5G57420.1	Thale cress	nucleus, plastid	73.75	69.01
HORVU2Hr1G112440.1	Barley	cytosol, nucleus	28.12	63.38
KRH33583	Soybean	cytosol, nucleus	35.62	53.77
VIT_11s0052g00870.t01	Wine grape	nucleus	55.62	52.98
Solyc07g019450.2.1	Tomato	nucleus, plastid	46.25	50.34
PGSC0003DMT400093571	Potato	nucleus	34.38	47.41
TraesCS2D01G506900.1	Wheat	nucleus, plastid	47.5	45.78
Os04t0653300-00	Rice	nucleus	48.12	45.56
TraesCS2B01G534500.1	Wheat	nucleus, plastid	46.88	45.45
TraesCS2A01G506100.1	Wheat	nucleus, plastid	46.25	44.31
Zm00001d026480_P001	Maize	nucleus	46.25	43.79
GSMUA_Achr6P03870_001	Banana	cytosol	35.0	43.41
EES11567	Sorghum	cytosol, plastid	45.0	43.11
KRG90334	Soybean	cytosol, plastid	37.5	42.86
GSMUA_Achr7P16390_001	Banana	nucleus	46.25	42.29
GSMUA_Achr10P...	Banana	nucleus	44.38	41.76

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra002729	EnsemblPlants:Bra002729.1
EnsemblPlants:Bra002729.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4CEU7	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF7	SUPFAM:SSF54277	UniParc:UPI0002544F8B	SEG:seg	:

Description

AT5G57420 (E=7e-038) IAA33 | IAA33 (INDOLE-3-ACETIC ACID INDUCIBLE 33); transcription factor

Coordinates

chrA10:+:7979552..7980492

Molecular Weight (calculated)

17897.2 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.439

Length

160 amino acids

Sequence
(BLAST)

001: MFHQDNTTQQ RRDTTTRTPS FMPNTLSRNP NSSSSSGAAV RFPRFGLNVY DDLVSSVVPP VTVVLEGRSI CQRVSLDKHE SYQSLALVLR QMFVDGADST
101: SGTDDLDLSN AIPGHLIAYE DMENDLLLAG DLSWKDFVRV AKRIRILPVK GNSRKVRRNE

Best Arabidopsis Sequence Match ( AT5G57420.1 )
(BLAST)

001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E

Arabidopsis Description

IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.