Factsheet for Bra016492.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra001670.1-P
Bra001900.1-P
Bra007632.1-P
Bra009867.1-P
Bra011332.1-P
Bra012190.1-P
Bra014419.1-P
Bra015298.1-P
Bra016492.1-P
Bra018993.1-P
Bra021117.1-P
Bra021257.1-P
Bra022224.1-P
Bra023958.1-P
Bra025775.1-P
Bra026166.1-P
Bra027232.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra035427.1-P
Bra036557.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	Bra015298.1-P	AT1G04250.1	21734647
AT1G19850.1	Bra030560.1-P	AT1G04250.1	21734647
AT1G19850.1	Bra032520.1-P	AT1G04250.1	21734647
AT1G19850.1	Bra026166.1-P	AT1G15050.1	21734647
AT1G19850.1	Bra012190.1-P	AT1G19850.1	14729917
AT1G19850.1	Bra016492.1-P	AT1G19850.1	14729917
AT1G19850.1	Bra025775.1-P	AT1G19850.1	14729917
AT1G19850.1	Bra012190.1-P	AT1G19850.1	21734647
AT1G19850.1	Bra016492.1-P	AT1G19850.1	21734647
AT1G19850.1	Bra025775.1-P	AT1G19850.1	21734647
AT1G19850.1	Bra012190.1-P	AT1G19850.1	22096563
AT1G19850.1	Bra016492.1-P	AT1G19850.1	22096563
AT1G19850.1	Bra025775.1-P	AT1G19850.1	22096563
AT1G19850.1	Bra012190.1-P	AT1G19850.1	24485461
AT1G19850.1	Bra016492.1-P	AT1G19850.1	24485461
AT1G19850.1	Bra025775.1-P	AT1G19850.1	24485461
AT1G19850.1	Bra018993.1-P	AT1G52830.1	14729917
AT1G19850.1	Bra035427.1-P	AT1G59750.1	22096563
AT1G19850.1	Bra001598.1-P	AT3G15540.1	14729917
AT1G19850.1	Bra021117.1-P	AT3G15540.1	14729917
AT1G19850.1	Bra027232.1-P	AT3G15540.1	14729917
AT1G19850.1	Bra001598.1-P	AT3G15540.1	22096563
AT1G19850.1	Bra021117.1-P	AT3G15540.1	22096563
AT1G19850.1	Bra027232.1-P	AT3G15540.1	22096563
AT1G19850.1	Bra001670.1-P	AT3G17600.1	21734647
AT1G19850.1	Bra021257.1-P	AT3G17600.1	21734647
AT1G19850.1	Bra022224.1-P	AT3G17600.1	21734647
AT1G19850.1	Bra001900.1-P	AT3G23050.1	21734647
AT1G19850.1	Bra033886.1-P	AT3G23050.1	21734647
AT1G19850.1	Bra007632.1-P	AT3G61830.1	22096563
AT1G19850.1	Bra014419.1-P	AT3G61830.1	22096563
AT1G19850.1	Bra039732.1-P	AT4G14560.1	14729917
AT1G19850.1	Bra039732.1-P	AT4G14560.1	22096563
AT1G19850.1	Bra039732.1-P	AT4G14560.1	9342315
AT1G19850.1	Bra011332.1-P	AT4G32280.1	21734647
AT1G19850.1	Bra023958.1-P	AT4G32280.1	21734647
AT1G19850.1	Bra009867.1-P	AT5G25890.1	21734647
AT1G19850.1	Bra036557.1-P	AT5G25890.1	21734647
AT1G19850.1	Bra009867.1-P	AT5G25890.1	22096563
AT1G19850.1	Bra036557.1-P	AT5G25890.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62586	Canola	nucleus	100.0	98.82
Bra025775.1-P	Field mustard	nucleus	52.39	93.19
Bra012190.1-P	Field mustard	nucleus	87.08	83.97
AT1G19850.1	Thale cress	nucleus	89.0	82.48
VIT_18s0001g13930.t01	Wine grape	nucleus	64.83	56.87
Solyc04g081240.2.1	Tomato	nucleus	62.2	55.91
PGSC0003DMT400009660	Potato	nucleus	62.08	55.87
KRH05923	Soybean	nucleus	61.72	55.31
KRH17404	Soybean	nucleus	61.48	55.27
GSMUA_Achr1P20040_001	Banana	nucleus	47.25	50.51
GSMUA_Achr6P36980_001	Banana	nucleus	47.13	45.92
EES13038	Sorghum	nucleus	47.25	41.75
TraesCS2A01G491000.1	Wheat	nucleus	47.13	41.26
Zm00001d001945_P002	Maize	nucleus	46.77	41.24
HORVU2Hr1G109650.18	Barley	nucleus	47.13	41.17
TraesCS2B01G519200.2	Wheat	nucleus	47.01	41.15
TraesCS2D01G491200.2	Wheat	nucleus	47.01	41.15
Os04t0664400-01	Rice	nucleus	45.22	41.09
Zm00001d026540_P002	Maize	nucleus	46.17	40.25
GSMUA_Achr1P20000_001	Banana	nucleus	46.65	40.16
Bra014419.1-P	Field mustard	nucleus	25.6	38.56
Bra004125.1-P	Field mustard	nucleus	35.65	38.21
Bra010776.1-P	Field mustard	nucleus	37.68	37.86
Bra004530.1-P	Field mustard	nucleus	26.2	37.5
Bra013748.1-P	Field mustard	nucleus	26.79	37.21
Bra028110.1-P	Field mustard	nucleus	37.44	37.09
Bra019255.1-P	Field mustard	nucleus	26.32	35.31
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	43.9	34.95
Bra035427.1-P	Field mustard	nucleus	27.27	34.29
Bra025720.1-P	Field mustard	nucleus	41.99	33.46
Bra016517.1-P	Field mustard	nucleus	40.31	33.37
Bra034234.1-P	Field mustard	nucleus	21.41	33.09
Bra020125.1-P	Field mustard	nucleus	42.22	32.09
Bra027944.1-P	Field mustard	nucleus	19.86	30.24
Bra002479.1-P	Field mustard	nucleus	26.91	29.68
Bra010048.1-P	Field mustard	nucleus	29.31	28.79
Bra018124.1-P	Field mustard	nucleus	19.02	28.65
Bra017362.1-P	Field mustard	nucleus	17.46	27.04
Bra035910.1-P	Field mustard	nucleus	28.71	27.03
Bra002327.1-P	Field mustard	nucleus	41.99	24.39
Bra007632.1-P	Field mustard	nucleus	26.55	21.04

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01300	ProteinID:AFD01300.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra016492	EnsemblPlants:Bra016492.1	EnsemblPlants:Bra016492.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EMBL:JN979466	UniProt:M4DJ15	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002546D3C	SEG:seg	:	:

Description

AT1G19850 (E=2e-224) MP, ARF5, IAA24 | MP (MONOPTEROS); transcription factor

Coordinates

chrA08:-:18703688..18707072

Molecular Weight (calculated)

92828.7 Da

IEP (calculated)

5.746

GRAVY (calculated)

-0.465

Length

836 amino acids

Sequence
(BLAST)

001: MKTNGLVNGG TTTSTTSQST LLEEMKLLKD QSGTRKPVIN SMLWHACAGP LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN
101: VTLHADKDSD EIYAQMSLQP VHSERDVLPV PDLGLLRGSK HPSEYFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYTAQ PPTQELVVRD LHENTWTFRH
201: IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFLIFFNPRA CPAEFVIPLP
301: KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWPGSK WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRQLHPSYF
401: AGENDWGSLI KRPLPYATFP NMASEQLMKM MMRPHNNQNA VTSFMPEMQQ NVLMGHGGLL GDVKMQQPMV MNQVVQVQPD NNNPSVSNTS GQEQNLSQSM
501: NAPTNLENSS GRVNHGNEEL SEKPSALSPL QADPSPEQIY PPQQSDPTNG FSFLETEEMT SQVSSFQSLA GSYKQPLMLS SNESSPIVLP DSTNSFQDMW
601: DNQLNGLKFD QFSPLMQQED LYGCQNMCMS NSTNSNILDP PPLSNTVLDD FCAIKETEFH SLVGNNNSFA QDVQSQITSA SFADSQAFSR QDNSGGTGGT
701: SSSNVDFDDT SLLQQNSKGS WQKLATPRVR TYTKVQKTGS VGRSIDVTSF RDYEELKTAI ECMFGLEGLL TRPKTSGWKL VYVDYESDVL LVGDDPWEEF
801: VGCVRCIRIL SPTEVQQMSE EGMKLLNSAC INDLKT

Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.