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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001598.1-P
Bra001634.1-P
Bra001670.1-P
Bra001900.1-P
Bra002327.1-P
Bra002479.1-P
Bra009867.1-P
Bra012190.1-P
Bra012910.1-P
Bra013748.1-P
Bra014303.1-P
Bra015289.1-P
Bra016492.1-P
Bra016517.1-P
Bra018938.1-P
Bra019255.1-P
Bra020125.1-P
Bra021117.1-P
Bra021184.1-P
Bra021257.1-P
Bra022164.1-P
Bra022224.1-P
Bra024406.1-P
Bra025720.1-P
Bra025775.1-P
Bra026755.1-P
Bra027232.1-P
Bra028110.1-P
Bra029990.1-P
Bra033886.1-P
Bra035427.1-P
Bra036048.1-P
Bra036557.1-P
Bra037824.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G15540.1 Bra015289.1-P AT1G04100.1 21734647
AT3G15540.1 Bra026755.1-P AT1G15580.1 21734647
AT3G15540.1 Bra016517.1-P AT1G19220.1 21734647
AT3G15540.1 Bra025720.1-P AT1G19220.1 21734647
AT3G15540.1 Bra012190.1-P AT1G19850.1 14729917
AT3G15540.1 Bra016492.1-P AT1G19850.1 14729917
AT3G15540.1 Bra025775.1-P AT1G19850.1 14729917
AT3G15540.1 Bra012190.1-P AT1G19850.1 21734647
AT3G15540.1 Bra016492.1-P AT1G19850.1 21734647
AT3G15540.1 Bra025775.1-P AT1G19850.1 21734647
AT3G15540.1 Bra012190.1-P AT1G19850.1 22096563
AT3G15540.1 Bra016492.1-P AT1G19850.1 22096563
AT3G15540.1 Bra025775.1-P AT1G19850.1 22096563
AT3G15540.1 Bra014303.1-P AT1G51950.1 21798944
AT3G15540.1 Bra018938.1-P AT1G51950.1 21798944
AT3G15540.1 Bra035427.1-P AT1G59750.1 22096563
AT3G15540.1 Bra040122.1-P AT3G04730.1 21734647
AT3G15540.1 Bra040398.1-P AT3G04730.1 21734647
AT3G15540.1 Bra001598.1-P AT3G15540.1 14729917
AT3G15540.1 Bra021117.1-P AT3G15540.1 14729917
AT3G15540.1 Bra027232.1-P AT3G15540.1 14729917
AT3G15540.1 Bra001634.1-P AT3G16500.1 21734647
AT3G15540.1 Bra021184.1-P AT3G16500.1 21734647
AT3G15540.1 Bra022164.1-P AT3G16500.1 21734647
AT3G15540.1 Bra001670.1-P AT3G17600.1 21734647
AT3G15540.1 Bra021257.1-P AT3G17600.1 21734647
AT3G15540.1 Bra022224.1-P AT3G17600.1 21734647
AT3G15540.1 Bra001900.1-P AT3G23050.1 21798944
AT3G15540.1 Bra033886.1-P AT3G23050.1 21798944
AT3G15540.1 Bra012910.1-P AT3G50060.1 17675404
AT3G15540.1 Bra029990.1-P AT3G50060.1 17675404
AT3G15540.1 Bra036048.1-P AT3G50060.1 17675404
AT3G15540.1 Bra039732.1-P AT4G14560.1 21798944
AT3G15540.1 Bra039732.1-P AT4G14560.1 9342315
AT3G15540.1 Bra013748.1-P AT4G23980.1 22096563
AT3G15540.1 Bra019255.1-P AT4G23980.1 22096563
AT3G15540.1 Bra002327.1-P AT5G20730.1 14729917
AT3G15540.1 Bra020125.1-P AT5G20730.1 14729917
AT3G15540.1 Bra009867.1-P AT5G25890.1 21734647
AT3G15540.1 Bra036557.1-P AT5G25890.1 21734647
AT3G15540.1 Bra028110.1-P AT5G37020.1 14729917
AT3G15540.1 Bra002479.1-P AT5G60450.1 22096563
AT3G15540.1 Bra024406.1-P AT5G65670.1 21734647
AT3G15540.1 Bra037824.1-P AT5G65670.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY71748 Canola cytosol, nucleus, plastid 83.51 93.64
Bra001598.1-P Field mustard nucleus 91.24 91.24
AT3G15540.1 Thale cress nucleus 91.24 89.85
Bra021117.1-P Field mustard cytosol, nucleus, plastid 90.21 88.83
KRH47514 Soybean nucleus 59.28 61.5
KRH09813 Soybean nucleus 59.28 61.5
KRH23504 Soybean nucleus 57.73 59.26
KRH44390 Soybean nucleus 58.76 58.46
Bra026755.1-P Field mustard nucleus 46.39 57.69
Bra018993.1-P Field mustard nucleus 59.28 56.65
VIT_09s0002g05150.t01 Wine grape cytosol, nucleus, plastid 53.61 54.17
PGSC0003DMT400006800 Potato mitochondrion 53.09 52.82
Solyc03g120380.2.1 Tomato nucleus 51.55 52.08
PGSC0003DMT400042572 Potato nucleus 28.87 51.85
Bra001899.1-P Field mustard nucleus 42.27 47.95
Bra023771.1-P Field mustard nucleus 42.27 47.95
Bra033890.1-P Field mustard nucleus 42.27 47.67
Bra032521.1-P Field mustard nucleus 42.27 45.56
Bra015297.1-P Field mustard cytosol, nucleus, plastid 41.75 43.55
Bra027504.1-P Field mustard nucleus 42.27 42.93
Bra039732.1-P Field mustard nucleus 37.11 42.11
Bra040398.1-P Field mustard nucleus 48.97 41.13
Bra040122.1-P Field mustard nucleus 46.91 40.44
Bra015298.1-P Field mustard nucleus 44.85 38.84
Bra032520.1-P Field mustard nucleus 45.36 38.77
Bra037824.1-P Field mustard plastid 38.66 38.46
Bra030560.1-P Field mustard nucleus 45.36 38.43
Bra039855.1-P Field mustard nucleus 44.85 37.34
Bra033886.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 46.39 37.19
Bra001900.1-P Field mustard cytosol, nucleus, plastid 45.36 37.13
Bra024406.1-P Field mustard nucleus 39.69 33.05
Bra030219.1-P Field mustard nucleus 41.24 30.08
Bra011082.1-P Field mustard nucleus 44.33 29.66
Bra031850.1-P Field mustard mitochondrion 43.81 29.11
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra027232EnsemblPlants:Bra027232.1
EnsemblPlants:Bra027232.1-PGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009734
GO:GO:0009987InterPro:IPR000270UniProt:M4EEM0InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF87SUPFAM:SSF54277UniParc:UPI0002547A1B::
Description
AT3G15540 (E=4e-099) IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19); transcription factor
Coordinates
chrA05:-:19832285..19833527
Molecular Weight (calculated)
21393.7 Da
IEP (calculated)
6.032
GRAVY (calculated)
-0.468
Length
194 amino acids
Sequence
(BLAST)
001: MEKGGVEHEI TELRLGLPGR DVTEKMMKKR GFTEMIMTSS GSNSDESGVV SGGDVEKINE SPTAKSQVVG WPPVCSYRRK NNCKEAWTTK VGLGYVKVSM
101: DGVPYLRKMD LGSSQGYDDL AFALDKLFGV RGIGVALKDG DNCKYVTIYE DKDGDWMLAG DVPWGMFIES CKRLRIMKRS DATGFGLQPR GVDE
Best Arabidopsis Sequence Match ( AT3G15540.1 )
(BLAST)
001: MEKEGLGLEI TELRLGLPGR DVAEKMMKKR AFTEMNMTSS GSNSDQCESG VVSSGGDAEK VNDSPAAKSQ VVGWPPVCSY RKKNSCKEAS TTKVGLGYVK
101: VSMDGVPYLR KMDLGSSQGY DDLAFALDKL FGFRGIGVAL KDGDNCEYVT IYEDKDGDWM LAGDVPWGMF LESCKRLRIM KRSDATGFGL QPRGVDE
Arabidopsis Description
IAA19Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.