Factsheet for Bra036048.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra002327.1-P
Bra020125.1-P
Bra021117.1-P
Bra027190.1-P
Bra027232.1-P
Bra035427.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50060.1	Bra035427.1-P	AT1G59750.1	17675404
AT3G50060.1	Bra001598.1-P	AT3G15540.1	17675404
AT3G50060.1	Bra021117.1-P	AT3G15540.1	17675404
AT3G50060.1	Bra027232.1-P	AT3G15540.1	17675404
AT3G50060.1	Bra027190.1-P	AT3G16120.1	21798944
AT3G50060.1	Bra002327.1-P	AT5G20730.1	17675404
AT3G50060.1	Bra020125.1-P	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30608	Canola	nucleus	96.99	97.36
CDY57355	Canola	nucleus	96.24	92.09
Bra012910.1-P	Field mustard	nucleus	81.2	73.72
AT3G50060.1	Thale cress	nucleus	79.32	70.1
Bra029990.1-P	Field mustard	nucleus	76.32	69.05
Bra012149.1-P	Field mustard	nucleus	61.65	55.41
Bra017813.1-P	Field mustard	nucleus	50.0	50.19
KRH05621	Soybean	nucleus	48.87	48.51
KRH15420	Soybean	nucleus	49.62	48.35
KRH61351	Soybean	nucleus	46.99	48.26
Bra032176.1-P	Field mustard	nucleus	52.26	47.6
GSMUA_Achr4P20150_001	Banana	nucleus	46.62	46.1
Bra010593.1-P	Field mustard	nucleus	52.26	45.57
Bra011749.1-P	Field mustard	nucleus	53.76	43.6
GSMUA_Achr3P13070_001	Banana	nucleus	47.37	43.45
GSMUA_Achr9P22600_001	Banana	nucleus	46.62	43.06
GSMUA_Achr1P26140_001	Banana	nucleus	42.86	40.43
Zm00001d005300_P001	Maize	nucleus	42.86	40.0
GSMUA_Achr3P28230_001	Banana	nucleus	43.23	39.93
GSMUA_Achr4P09450_001	Banana	nucleus	45.11	39.74
GSMUA_Achr1P09750_001	Banana	nucleus	44.36	39.73
GSMUA_Achr4P12950_001	Banana	nucleus	39.47	39.47
VIT_03s0180g00210.t01	Wine grape	nucleus	44.74	39.27
Os09t0106700-01	Rice	nucleus	46.24	38.56
GSMUA_Achr8P25220_001	Banana	nucleus	42.11	37.84
GSMUA_AchrUn_...	Banana	nucleus	39.47	37.1
TraesCS5B01G157300.1	Wheat	nucleus	46.62	37.01
TraesCS5A01G159600.1	Wheat	nucleus	45.86	36.31
TraesCS5D01G164600.1	Wheat	nucleus	46.24	35.86
Zm00001d019712_P001	Maize	nucleus	46.24	35.65
EER98550	Sorghum	nucleus	46.24	33.61
Bra039036.1-P	Field mustard	nucleus	22.56	31.09
HORVU5Hr1G049880.1	Barley	plastid	44.74	28.07
Bra008096.1-P	Field mustard	nucleus	23.68	26.92
Bra015992.1-P	Field mustard	nucleus	22.56	26.32
Bra001323.1-P	Field mustard	nucleus	31.2	24.78
Bra037004.1-P	Field mustard	nucleus	22.18	24.48
Bra011441.1-P	Field mustard	nucleus	22.18	23.69
Bra034565.1-P	Field mustard	nucleus	22.18	23.51
Bra034057.1-P	Field mustard	nucleus	33.08	22.74
Bra016575.1-P	Field mustard	nucleus	20.68	22.73
Bra033078.1-P	Field mustard	nucleus	24.06	22.38
Bra007186.1-P	Field mustard	nucleus	31.2	22.37
Bra031008.1-P	Field mustard	nucleus	20.68	22.27
Bra025652.1-P	Field mustard	nucleus	21.05	21.62
Bra003995.1-P	Field mustard	nucleus	23.68	21.21
Bra004394.1-P	Field mustard	nucleus	24.06	20.0
Bra002107.1-P	Field mustard	nucleus	24.06	19.75
Bra005006.1-P	Field mustard	nucleus	28.57	19.1
Bra023637.1-P	Field mustard	nucleus	22.56	18.87
Bra006422.1-P	Field mustard	nucleus	22.18	18.85
Bra016285.1-P	Field mustard	nucleus	24.06	18.13

Protein Annotations

EnsemblPlants:Bra036048.1	EnsemblPlants:Bra036048.1-P	EnsemblPlantsGene:Bra036048	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF691	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002542B5F	UniProt:M4F4P8	MapMan:15.5.2.1	:	:

Description

AT3G50060 (E=5e-073) MYB77 | MYB77; DNA binding / transcription factor

Coordinates

chrA09:-:24937870..24938670

Molecular Weight (calculated)

29615.7 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.818

Length

266 amino acids

Sequence
(BLAST)

001: MADRVKGPWS QEEDEQLRLM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV SARAKFGNKW ATIARLLNGR TNNAVKNHWN
101: STLKRKCLDG NPTAEEEQDP AKKRRSMSSE SVPPVDTGLY MSPESPTDVG SDSSAVPPQL FKPMTSSSEE DPATTLSLSL SLPVSQESRN TGSSDNSLPF
201: PRFERQMKIN VEERGGEARR AEFMTVVHEM VKAEVRSYMA EMQRNNGGGF VVGGFYDSGG ITPKVE

Best Arabidopsis Sequence Match ( AT3G50060.1 )
(BLAST)

001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E

Arabidopsis Description

MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.