Factsheet for GSMUA_AchrUn_randomP01280_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P19900_001
GSMUA_Achr3P10240_001
GSMUA_Achr6P07390_001
GSMUA_Achr6P12780_001
GSMUA_Achr6P29070_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001
GSMUA_Achr9P08310_001
GSMUA_Achr9P18170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50060.1	GSMUA_Achr10P...	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr6P07390_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr6P12780_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr6P29070_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr9P08310_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr3P10240_001	AT5G20730.1	17675404
AT3G50060.1	GSMUA_Achr9P18170_001	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P09750_001	Banana	nucleus	67.49	64.31
GSMUA_Achr4P20150_001	Banana	nucleus	54.77	57.62
GSMUA_Achr4P09450_001	Banana	nucleus	57.6	53.97
GSMUA_Achr3P13070_001	Banana	nucleus	54.06	52.76
GSMUA_Achr1P26140_001	Banana	nucleus	50.88	51.06
KRH61351	Soybean	nucleus	44.17	48.26
KRH05621	Soybean	nucleus	45.23	47.76
Zm00001d005300_P001	Maize	nucleus	48.06	47.72
GSMUA_Achr4P12950_001	Banana	nucleus	44.52	47.37
KRH15420	Soybean	nucleus	45.23	46.89
GSMUA_Achr9P22600_001	Banana	nucleus	47.7	46.88
Os09t0106700-01	Rice	nucleus	52.3	46.4
GSMUA_Achr8P25220_001	Banana	nucleus	48.06	45.95
GSMUA_Achr3P28230_001	Banana	nucleus	46.29	45.49
VIT_03s0180g00210.t01	Wine grape	nucleus	46.64	43.56
CDY12830	Canola	nucleus	38.16	42.69
Zm00001d019712_P001	Maize	nucleus	51.59	42.32
Bra012149.1-P	Field mustard	nucleus	43.82	41.89
TraesCS5B01G157300.1	Wheat	nucleus	49.47	41.79
AT5G67300.1	Thale cress	nucleus	44.88	41.64
CDY01420	Canola	nucleus	38.52	41.44
TraesCS5A01G159600.1	Wheat	nucleus	49.12	41.37
TraesCS5D01G164600.1	Wheat	nucleus	49.12	40.52
CDY30608	Canola	nucleus	37.81	40.38
EER98550	Sorghum	nucleus	51.94	40.16
Bra036048.1-P	Field mustard	nucleus	37.1	39.47
CDY23023	Canola	nucleus	40.28	39.31
Bra012910.1-P	Field mustard	nucleus	40.64	39.25
CDY57355	Canola	nucleus	38.52	39.21
CDY02098	Canola	nucleus	40.28	38.91
AT3G50060.1	Thale cress	nucleus	40.64	38.21
Bra029990.1-P	Field mustard	nucleus	38.52	37.07
GSMUA_Achr3P16490_001	Banana	nucleus	21.55	36.31
GSMUA_Achr6P33470_001	Banana	nucleus	28.62	36.0
CDX68566	Canola	nucleus	37.46	33.76
HORVU5Hr1G049880.1	Barley	plastid	49.12	32.78
GSMUA_Achr3P07700_001	Banana	nucleus	22.61	31.22
GSMUA_Achr11P...	Banana	nucleus	19.79	30.6
GSMUA_Achr9P29090_001	Banana	nucleus	21.91	29.52
GSMUA_Achr9P03720_001	Banana	nucleus	33.57	29.5
GSMUA_Achr9P15750_001	Banana	nucleus	20.85	27.96
GSMUA_Achr6P17630_001	Banana	nucleus	23.67	25.48
GSMUA_Achr3P18970_001	Banana	nucleus	23.32	25.19
GSMUA_Achr6P15900_001	Banana	nucleus	24.38	25.09
GSMUA_Achr9P08480_001	Banana	nucleus	22.61	25.0
GSMUA_Achr5P27750_001	Banana	nucleus	21.91	24.6
GSMUA_Achr5P28780_001	Banana	nucleus	33.92	24.18
GSMUA_Achr10P...	Banana	nucleus	21.55	23.46
GSMUA_Achr10P...	Banana	nucleus	24.73	23.03
GSMUA_Achr11P...	Banana	nucleus	21.91	22.55
GSMUA_Achr9P04990_001	Banana	nucleus	23.32	21.85
GSMUA_Achr9P17000_001	Banana	nucleus	22.97	21.38
GSMUA_Achr5P23290_001	Banana	nucleus	22.61	21.19
GSMUA_Achr3P09490_001	Banana	nucleus	23.67	21.0
GSMUA_Achr10P...	Banana	nucleus	23.67	20.87
GSMUA_Achr6P32250_001	Banana	nucleus	25.44	20.81
GSMUA_Achr6P02580_001	Banana	nucleus	24.73	19.77
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	24.73	17.77
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	22.61	13.62

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
EnsemblPlantsGene:GSMUA_AchrUn_randomG01280_001	EnsemblPlants:GSMUA_AchrUn_randomP01280_001	EnsemblPlants:GSMUA_AchrUn_randomT01280_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0U5E0
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF940	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000296CEC2	SEG:seg	:	:

Description

Putative Transcription factor MYB44 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01280_001]

Coordinates

chrchrUn_random:+:4240224..4241540

Molecular Weight (calculated)

31003.5 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.575

Length

283 amino acids

Sequence
(BLAST)

001: MWGKVVDSMM AATGSSSSSK DVDRIKGPWS PDEDAALQRL VQRHGPRNWS PISKSIPGRS GKSCRLRWCN QLSPQVEHRP FTAEEDEIII RAHRRFGNKW
101: ATIARLLSGR TDNAIKNHWN STLKRKCTPL FGDGGASSDG SVLLSGRTGM CLNPGSPSGS DLSDSGHHSH SVTVTGAVMP PSSSPHQSHQ MEQITAAITD
201: TTTPLIIYED PPQRCSTTAS AASAEEERRP EPFPLSAEVL AVMQEMICKE VKCYMAGLEH HEVRHAESVR DTDINRIGLT KIE

Best Arabidopsis Sequence Match ( AT2G23290.1 )
(BLAST)

001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE

Arabidopsis Description

AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.