Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83109 | Canola | nucleus | 46.5 | 90.12 |
| Bra029990.1-P | Field mustard | nucleus | 75.16 | 80.27 |
| CDY57355 | Canola | nucleus | 58.92 | 66.55 |
| CDY30608 | Canola | nucleus | 56.05 | 66.42 |
| CDY23023 | Canola | nucleus | 61.15 | 66.21 |
| CDY02098 | Canola | nucleus | 61.47 | 65.87 |
| AT3G50060.1 | Thale cress | nucleus | 59.87 | 62.46 |
| CDY12830 | Canola | nucleus | 42.04 | 52.17 |
| CDY01420 | Canola | nucleus | 42.04 | 50.19 |
| CDY43567 | Canola | nucleus | 31.85 | 46.08 |
| KRH05621 | Soybean | nucleus | 38.22 | 44.78 |
| CDY29542 | Canola | nucleus | 36.94 | 43.77 |
| KRH15420 | Soybean | nucleus | 37.9 | 43.59 |
| CDY22442 | Canola | nucleus | 37.9 | 43.27 |
| CDX72621 | Canola | nucleus | 36.31 | 43.02 |
| CDY44045 | Canola | nucleus | 37.9 | 41.75 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 35.67 | 41.64 |
| CDY38933 | Canola | nucleus | 38.53 | 41.44 |
| KRH61351 | Soybean | nucleus | 34.08 | 41.31 |
| CDX89554 | Canola | nucleus | 38.22 | 40.96 |
| CDX75635 | Canola | nucleus | 38.53 | 40.47 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 37.26 | 40.34 |
| CDX69287 | Canola | nucleus | 38.53 | 39.54 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 37.9 | 39.4 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 35.35 | 38.54 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 34.39 | 38.3 |
| Zm00001d005300_P001 | Maize | nucleus | 34.39 | 37.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.76 | 37.46 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 35.35 | 37.37 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 35.67 | 36.96 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 34.08 | 36.15 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 30.57 | 36.09 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 32.8 | 35.76 |
| Os09t0106700-01 | Rice | nucleus | 35.99 | 35.42 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 36.62 | 34.33 |
| Zm00001d019712_P001 | Maize | nucleus | 37.26 | 33.91 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 35.99 | 33.63 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 36.31 | 33.24 |
| CDY21728 | Canola | nucleus | 15.92 | 31.85 |
| CDY35992 | Canola | nucleus | 15.92 | 31.85 |
| EER98550 | Sorghum | nucleus | 36.31 | 31.15 |
| CDX83108 | Canola | cytosol | 3.5 | 28.21 |
| HORVU5Hr1G049880.1 | Barley | plastid | 37.26 | 27.59 |
| CDX83880 | Canola | nucleus | 15.92 | 27.47 |
| CDY58312 | Canola | nucleus | 19.11 | 25.64 |
| CDX72988 | Canola | nucleus | 18.15 | 25.22 |
| CDX96475 | Canola | nucleus | 18.15 | 25.0 |
| CDX82074 | Canola | nucleus | 18.47 | 24.89 |
| CDX73963 | Canola | nucleus | 25.48 | 23.88 |
| CDY07907 | Canola | nucleus | 25.16 | 23.8 |
| CDY71713 | Canola | nucleus | 17.2 | 23.48 |
| CDY44415 | Canola | nucleus | 19.43 | 23.37 |
| CDY46114 | Canola | nucleus | 17.83 | 23.24 |
| CDX72405 | Canola | nucleus | 17.83 | 23.24 |
| CDX96742 | Canola | nucleus | 17.83 | 23.14 |
| CDX68977 | Canola | nucleus | 18.15 | 22.8 |
| CDX75353 | Canola | nucleus | 18.15 | 22.71 |
| CDY28302 | Canola | nucleus | 17.83 | 22.31 |
| CDX81853 | Canola | nucleus | 17.2 | 21.86 |
| CDY30264 | Canola | nucleus | 17.83 | 21.54 |
| CDX72208 | Canola | nucleus | 25.16 | 21.47 |
| CDY27271 | Canola | nucleus | 25.48 | 21.45 |
| CDY21727 | Canola | nucleus | 16.88 | 21.12 |
| CDY20494 | Canola | nucleus | 24.52 | 20.92 |
| CDY20004 | Canola | nucleus | 18.47 | 20.21 |
| CDY66025 | Canola | nucleus | 18.47 | 20.14 |
| CDY67868 | Canola | nucleus | 19.11 | 20.13 |
| CDY07345 | Canola | nucleus | 19.11 | 20.13 |
| CDY67808 | Canola | nucleus | 10.19 | 20.13 |
| CDY40941 | Canola | nucleus | 20.06 | 19.69 |
| CDX95921 | Canola | nucleus | 19.75 | 19.38 |
| CDY69058 | Canola | nucleus | 16.24 | 19.32 |
| CDX74825 | Canola | nucleus | 24.52 | 19.2 |
| CDY16884 | Canola | nucleus | 18.47 | 18.59 |
| CDY66170 | Canola | nucleus | 18.47 | 18.47 |
| CDX85443 | Canola | nucleus | 17.83 | 18.24 |
| CDY38460 | Canola | nucleus | 18.79 | 18.21 |
| CDY02687 | Canola | nucleus | 17.83 | 18.06 |
| CDY50737 | Canola | nucleus | 19.75 | 18.02 |
| CDX78761 | Canola | nucleus | 17.52 | 17.57 |
| CDX70776 | Canola | nucleus | 17.52 | 17.57 |
| CDY44993 | Canola | nucleus | 19.43 | 17.28 |
| CDY46444 | Canola | nucleus | 19.43 | 17.28 |
| CDY70901 | Canola | nucleus | 14.01 | 15.38 |
| CDY70773 | Canola | nucleus | 14.01 | 15.38 |
| CDX74436 | Canola | nucleus | 17.52 | 15.24 |
Protein Annotations
| EnsemblPlants:CDX68566 | EnsemblPlantsGene:GSBRNA2T00126145001 | Gene3D:1.10.10.60 | GO:A0A078BUU3 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF940 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX68566 | ProteinID:CDX68566.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE32CA | MapMan:15.5.2.1 | : |
Description
BnaC01g26440D
Coordinates
chrLK031788:-:4196439..4197712
Molecular Weight (calculated)
34857.7 Da
IEP (calculated)
7.620
GRAVY (calculated)
-0.415
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEAGAMTFS TVSTGYQLYF PFLYINDLSF FLVSTILLDS MADRAKGPWS QEEDEQLRRM VEHYGPRNWL EVSKSVPGRS GKSCRLRWCN QLSPVVEHRP
101: FSSEEDKTIV SARATFGNKW ATIARLLNGR TDNAVKNHWN STLKRKYLGG GGDGNLIVMT TEDQDRRKKR RSVRSESATP VDTGLYMSPE SPTGIPPPPS
201: PPSPVDAQLL KPMAMPSPAE MSSVEEDPTA QELKPHNSLL FPRFGSQMKI NVEERGEALV GHKAEFLTVV QEMIKVEVRS YMAEMQKKIA VVAVVNSSSE
301: VSMMPATAVS GIVG
101: FSSEEDKTIV SARATFGNKW ATIARLLNGR TDNAVKNHWN STLKRKYLGG GGDGNLIVMT TEDQDRRKKR RSVRSESATP VDTGLYMSPE SPTGIPPPPS
201: PPSPVDAQLL KPMAMPSPAE MSSVEEDPTA QELKPHNSLL FPRFGSQMKI NVEERGEALV GHKAEFLTVV QEMIKVEVRS YMAEMQKKIA VVAVVNSSSE
301: VSMMPATAVS GIVG
001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
Arabidopsis Description
MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.