Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44415 | Canola | nucleus | 77.07 | 92.72 |
| CDY20004 | Canola | nucleus | 71.66 | 78.4 |
| CDY66025 | Canola | nucleus | 71.34 | 77.78 |
| AT3G29020.2 | Thale cress | nucleus | 74.52 | 76.72 |
| CDY30264 | Canola | nucleus | 42.68 | 51.54 |
| CDY67808 | Canola | nucleus | 25.48 | 50.31 |
| CDY35992 | Canola | nucleus | 23.25 | 46.5 |
| CDY21728 | Canola | nucleus | 22.93 | 45.86 |
| CDX83880 | Canola | nucleus | 23.57 | 40.66 |
| CDX72988 | Canola | nucleus | 27.71 | 38.5 |
| GSMUA_Achr5P27750_001 | Banana | nucleus | 30.57 | 38.1 |
| CDX96475 | Canola | nucleus | 27.39 | 37.72 |
| CDX74436 | Canola | nucleus | 42.99 | 37.4 |
| CDX82074 | Canola | nucleus | 27.39 | 36.91 |
| CDY58312 | Canola | nucleus | 27.39 | 36.75 |
| Os01t0274800-01 | Rice | nucleus | 30.89 | 36.6 |
| CDY71713 | Canola | nucleus | 25.8 | 35.22 |
| GSMUA_Achr6P15900_001 | Banana | nucleus | 30.57 | 34.91 |
| CDX81853 | Canola | nucleus | 27.39 | 34.82 |
| CDX96742 | Canola | nucleus | 26.75 | 34.71 |
| CDX83109 | Canola | nucleus | 17.83 | 34.57 |
| CDY21727 | Canola | nucleus | 27.39 | 34.26 |
| CDX68977 | Canola | nucleus | 26.11 | 32.8 |
| CDX72405 | Canola | nucleus | 25.16 | 32.78 |
| GSMUA_Achr9P04990_001 | Banana | nucleus | 31.21 | 32.45 |
| CDY28302 | Canola | nucleus | 25.8 | 32.27 |
| CDX75353 | Canola | nucleus | 25.8 | 32.27 |
| TraesCS3B01G217100.1 | Wheat | nucleus | 32.17 | 32.27 |
| GSMUA_Achr10P... | Banana | nucleus | 31.21 | 32.24 |
| CDY07345 | Canola | nucleus | 30.25 | 31.88 |
| CDY67868 | Canola | nucleus | 29.94 | 31.54 |
| CDY46114 | Canola | nucleus | 24.2 | 31.54 |
| TraesCS3D01G191400.1 | Wheat | nucleus | 31.85 | 31.15 |
| TraesCS3A01G187800.1 | Wheat | nucleus | 32.17 | 31.08 |
| HORVU3Hr1G038700.2 | Barley | nucleus | 32.48 | 30.91 |
| GSMUA_Achr3P09490_001 | Banana | nucleus | 31.21 | 30.72 |
| EES02760 | Sorghum | nucleus | 26.11 | 30.71 |
| GSMUA_Achr9P17000_001 | Banana | nucleus | 29.62 | 30.59 |
| CDY16884 | Canola | nucleus | 30.25 | 30.45 |
| CDX85443 | Canola | nucleus | 29.62 | 30.29 |
| CDY02687 | Canola | nucleus | 29.62 | 30.0 |
| CDY69058 | Canola | nucleus | 25.16 | 29.92 |
| GSMUA_Achr10P... | Banana | nucleus | 30.57 | 29.91 |
| CDY40941 | Canola | nucleus | 29.94 | 29.38 |
| CDY38460 | Canola | nucleus | 30.25 | 29.32 |
| GSMUA_Achr6P32250_001 | Banana | nucleus | 32.17 | 29.19 |
| CDX95921 | Canola | nucleus | 29.62 | 29.06 |
| Zm00001d040428_P001 | Maize | nucleus | 25.8 | 28.62 |
| CDX78761 | Canola | nucleus | 28.34 | 28.43 |
| CDY50737 | Canola | nucleus | 30.57 | 27.91 |
| CDX70776 | Canola | nucleus | 27.71 | 27.8 |
| CDY44993 | Canola | nucleus | 30.57 | 27.2 |
| CDY46444 | Canola | nucleus | 30.57 | 27.2 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 32.48 | 25.89 |
| CDY12830 | Canola | nucleus | 20.38 | 25.3 |
| CDY01420 | Canola | nucleus | 20.38 | 24.33 |
| CDY30608 | Canola | nucleus | 20.06 | 23.77 |
| CDY22442 | Canola | nucleus | 20.06 | 22.91 |
| CDY57355 | Canola | nucleus | 20.06 | 22.66 |
| CDX72621 | Canola | nucleus | 19.11 | 22.64 |
| CDY23023 | Canola | nucleus | 20.7 | 22.41 |
| CDY29542 | Canola | nucleus | 18.79 | 22.26 |
| CDY02098 | Canola | nucleus | 20.7 | 22.18 |
| CDY44045 | Canola | nucleus | 20.06 | 22.11 |
| CDX75635 | Canola | nucleus | 20.7 | 21.74 |
| CDY38933 | Canola | nucleus | 20.06 | 21.58 |
| CDX69287 | Canola | nucleus | 20.7 | 21.24 |
| CDX89554 | Canola | nucleus | 19.75 | 21.16 |
| CDX68566 | Canola | nucleus | 18.47 | 18.47 |
| CDX73963 | Canola | nucleus | 19.11 | 17.91 |
| CDY07907 | Canola | nucleus | 18.79 | 17.77 |
| CDY27271 | Canola | nucleus | 21.02 | 17.69 |
| CDX72208 | Canola | nucleus | 20.7 | 17.66 |
| CDY43567 | Canola | nucleus | 11.78 | 17.05 |
| CDY20494 | Canola | nucleus | 19.75 | 16.85 |
| CDX74825 | Canola | nucleus | 19.75 | 15.46 |
| CDY70901 | Canola | nucleus | 9.87 | 10.84 |
| CDY70773 | Canola | nucleus | 9.87 | 10.84 |
| CDX83108 | Canola | cytosol | 0.64 | 5.13 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078JI42 | UniProt:A0A078JI42 | EnsemblPlants:CDY66170 | ProteinID:CDY66170 |
| ProteinID:CDY66170.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00052213001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF473 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EEDA55 | SEG:seg |
Description
BnaCnng49790DBnaCnng49790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JI42]
Coordinates
chrLK035117:-:14491..15593
Molecular Weight (calculated)
36451.2 Da
IEP (calculated)
9.623
GRAVY (calculated)
-0.858
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIEERDQEK GYMDVSCFQE YPFDLHCRGA FNGFGENNAV ELSNKRSILK ESDEFKKKKK KKQRGSSRVC SRGHWRVSED SQLMELVSAC GPQNWNHIAE
101: KMQGRRTGKS CRLRWFNQLD PRINKRAFSV EEEERLLAAH RAFGNKWAMI AKLFNRRTDN ALKNHWHVLM ARKLRQQSTS YLRRINESSY NPTSDHKTFT
201: LPHGIVDDED MNLEKKSWKT LKEEYTTNLK AQYLQEEYCS LRMPMQGPHH HSPTFPADSL ALTLHVSIQE PSLSPSLSSS SCAEHRVVAR YFETTKPPAF
301: IDFLGVGHQS PNKT
101: KMQGRRTGKS CRLRWFNQLD PRINKRAFSV EEEERLLAAH RAFGNKWAMI AKLFNRRTDN ALKNHWHVLM ARKLRQQSTS YLRRINESSY NPTSDHKTFT
201: LPHGIVDDED MNLEKKSWKT LKEEYTTNLK AQYLQEEYCS LRMPMQGPHH HSPTFPADSL ALTLHVSIQE PSLSPSLSSS SCAEHRVVAR YFETTKPPAF
301: IDFLGVGHQS PNKT
001: MKMDFSCFQE YPFEFHCRGT TFNGFRENNA VSETVEEFCN KRRMQKKSDD LKTKKKKKQS VSRVCSRGHW RISEDTQLME LVSVYGPQNW NHIAESMQGR
101: TGKSCRLRWF NQLDPRINKR AFSDEEEERL LAAHRAFGNK WAMIAKLFNG RTDNALKNHW HVLMARKMRQ QSSSYVQRFN GSAHESNTDH KIFNLSPGNV
201: DDDEDVNLKK CSWEMLKEGT TNLKAQYLQE EYSSSRMPMQ GPHHHYSTFP ADSLALTLHV SIQEPSSSSS LSLPSSSTTG EHTMVTRYFE TIKPPAFIDF
301: LGVGH
101: TGKSCRLRWF NQLDPRINKR AFSDEEEERL LAAHRAFGNK WAMIAKLFNG RTDNALKNHW HVLMARKMRQ QSSSYVQRFN GSAHESNTDH KIFNLSPGNV
201: DDDEDVNLKK CSWEMLKEGT TNLKAQYLQE EYSSSRMPMQ GPHHHYSTFP ADSLALTLHV SIQEPSSSSS LSLPSSSTTG EHTMVTRYFE TIKPPAFIDF
301: LGVGH
Arabidopsis Description
MYB110Myb domain protein 110 [Source:UniProtKB/TrEMBL;Acc:F4J1R5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.