Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023637.1-P | Field mustard | nucleus | 90.91 | 75.47 |
| CDX85443 | Canola | nucleus | 87.5 | 75.24 |
| CDY02687 | Canola | nucleus | 84.09 | 71.61 |
| CDY38460 | Canola | nucleus | 73.48 | 59.88 |
| CDY16884 | Canola | nucleus | 69.7 | 58.97 |
| CDX70776 | Canola | nucleus | 68.94 | 58.15 |
| AT5G17800.1 | Thale cress | nucleus | 70.45 | 57.59 |
| CDX78761 | Canola | nucleus | 68.18 | 57.51 |
| CDY35992 | Canola | nucleus | 31.44 | 52.87 |
| CDY21728 | Canola | nucleus | 30.3 | 50.96 |
| CDX83880 | Canola | nucleus | 31.44 | 45.6 |
| CDX96475 | Canola | nucleus | 32.95 | 38.16 |
| CDX72988 | Canola | nucleus | 32.2 | 37.61 |
| CDX82074 | Canola | nucleus | 32.58 | 36.91 |
| CDY58312 | Canola | nucleus | 32.58 | 36.75 |
| CDY67808 | Canola | nucleus | 21.59 | 35.85 |
| CDX96742 | Canola | nucleus | 32.58 | 35.54 |
| CDY21727 | Canola | nucleus | 32.95 | 34.66 |
| CDX81853 | Canola | nucleus | 32.2 | 34.41 |
| CDY71713 | Canola | nucleus | 28.03 | 32.17 |
| PGSC0003DMT400072258 | Potato | nucleus | 37.5 | 30.84 |
| Solyc10g081320.1.1 | Tomato | nucleus | 36.74 | 30.41 |
| CDY30264 | Canola | nucleus | 29.92 | 30.38 |
| CDX83109 | Canola | nucleus | 18.56 | 30.25 |
| CDX68977 | Canola | nucleus | 28.41 | 30.0 |
| CDY44415 | Canola | nucleus | 29.55 | 29.89 |
| CDX75353 | Canola | nucleus | 28.41 | 29.88 |
| CDX72405 | Canola | nucleus | 26.89 | 29.46 |
| CDY28302 | Canola | nucleus | 27.65 | 29.08 |
| CDY07345 | Canola | nucleus | 32.58 | 28.86 |
| CDY67868 | Canola | nucleus | 32.58 | 28.86 |
| CDY46114 | Canola | nucleus | 25.76 | 28.22 |
| CDY20004 | Canola | nucleus | 30.3 | 27.87 |
| CDX95921 | Canola | nucleus | 33.71 | 27.81 |
| CDY40941 | Canola | nucleus | 33.71 | 27.81 |
| CDY66025 | Canola | nucleus | 29.92 | 27.43 |
| KRG94926 | Soybean | nucleus | 38.26 | 26.72 |
| KRH64970 | Soybean | nucleus | 39.77 | 25.93 |
| CDY50737 | Canola | nucleus | 33.71 | 25.87 |
| CDY44993 | Canola | nucleus | 33.71 | 25.21 |
| CDY46444 | Canola | nucleus | 33.71 | 25.21 |
| CDY66170 | Canola | nucleus | 29.92 | 25.16 |
| VIT_08s0056g01190.t01 | Wine grape | golgi | 39.77 | 23.54 |
| CDX74436 | Canola | nucleus | 30.3 | 22.16 |
| CDY12830 | Canola | nucleus | 21.21 | 22.13 |
| CDY29542 | Canola | nucleus | 21.59 | 21.51 |
| CDX72621 | Canola | nucleus | 21.59 | 21.51 |
| CDY01420 | Canola | nucleus | 21.21 | 21.29 |
| CDY22442 | Canola | nucleus | 21.97 | 21.09 |
| CDY30608 | Canola | nucleus | 20.83 | 20.75 |
| CDX89554 | Canola | nucleus | 22.73 | 20.48 |
| CDY44045 | Canola | nucleus | 21.97 | 20.35 |
| CDY38933 | Canola | nucleus | 22.35 | 20.21 |
| CDY57355 | Canola | nucleus | 21.21 | 20.14 |
| CDX75635 | Canola | nucleus | 22.35 | 19.73 |
| CDY23023 | Canola | nucleus | 21.21 | 19.31 |
| CDX69287 | Canola | nucleus | 22.35 | 19.28 |
| CDY02098 | Canola | nucleus | 21.21 | 19.11 |
| CDX68566 | Canola | nucleus | 19.32 | 16.24 |
| CDY27271 | Canola | nucleus | 21.97 | 15.55 |
| CDX73963 | Canola | nucleus | 19.7 | 15.52 |
| CDY20494 | Canola | nucleus | 21.59 | 15.49 |
| CDY07907 | Canola | nucleus | 19.32 | 15.36 |
| CDX72208 | Canola | nucleus | 21.21 | 15.22 |
| CDY43567 | Canola | nucleus | 12.5 | 15.21 |
| CDX74825 | Canola | nucleus | 21.97 | 14.46 |
| CDY70773 | Canola | nucleus | 9.09 | 8.39 |
| CDY70901 | Canola | nucleus | 9.09 | 8.39 |
| CDX83108 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078JND7 | UniProt:A0A078JND7 | EnsemblPlants:CDY69058 | ProteinID:CDY69058 |
| ProteinID:CDY69058.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00082615001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF941 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE474C | SEG:seg |
Description
BnaCnng61660DBnaCnng61660D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JND7]
Coordinates
chrLK038545:-:2246..3388
Molecular Weight (calculated)
29879.6 Da
IEP (calculated)
9.236
GRAVY (calculated)
-0.957
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: RKKKNPNLLE KDQTSNDTIH GSRRFKEANN FSLARNHPLN KTFLKSEDEH EGENGWKRRG QSGMKAKVCS RGHWRPTEDA KLKELVAQFG PQNWNAVINV
101: ASLTSGKSCR LRWFNQLDPR INKTAFTEEE ELRLLAVHRA YGNKWALISR LFPGRSDNAV KNHWHVIMAR RTRKSQRQRH QPPQAPSGNA EMAVSSPYNQ
201: GDEFFGTVVN GTFVNEEDDD ADDDDASAVS TCPTELSLTP PSSTHQLGFF NYDNTLASGN NLCN
101: ASLTSGKSCR LRWFNQLDPR INKTAFTEEE ELRLLAVHRA YGNKWALISR LFPGRSDNAV KNHWHVIMAR RTRKSQRQRH QPPQAPSGNA EMAVSSPYNQ
201: GDEFFGTVVN GTFVNEEDDD ADDDDASAVS TCPTELSLTP PSSTHQLGFF NYDNTLASGN NLCN
001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
Arabidopsis Description
MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.