Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031008.1-P | Field mustard | nucleus | 95.95 | 95.95 |
| CDY21728 | Canola | nucleus | 60.32 | 94.9 |
| CDY21727 | Canola | nucleus | 93.52 | 92.03 |
| CDY35992 | Canola | nucleus | 58.3 | 91.72 |
| CDX83880 | Canola | nucleus | 63.16 | 85.71 |
| AT1G17950.1 | Thale cress | nucleus | 85.43 | 84.74 |
| CDX96742 | Canola | nucleus | 81.78 | 83.47 |
| CDX96475 | Canola | nucleus | 63.56 | 68.86 |
| CDX72988 | Canola | nucleus | 62.35 | 68.14 |
| CDY58312 | Canola | nucleus | 63.56 | 67.09 |
| CDX82074 | Canola | nucleus | 61.54 | 65.24 |
| VIT_17s0000g01890.t01 | Wine grape | nucleus | 54.25 | 60.63 |
| KRH09502 | Soybean | nucleus | 53.85 | 56.84 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 47.37 | 55.71 |
| KRH38975 | Soybean | nucleus | 53.44 | 55.7 |
| PGSC0003DMT400079714 | Potato | nucleus | 51.82 | 52.46 |
| EER93554 | Sorghum | nucleus | 48.18 | 49.79 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 47.77 | 48.56 |
| Zm00001d033815_P001 | Maize | nucleus | 48.58 | 48.39 |
| Os03t0720800-01 | Rice | nucleus | 47.77 | 48.16 |
| Zm00001d013399_P001 | Maize | nucleus | 46.56 | 47.92 |
| TraesCS4B01G052400.2 | Wheat | nucleus | 46.96 | 46.59 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 45.75 | 45.2 |
| CDY71713 | Canola | nucleus | 38.87 | 41.74 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 46.15 | 41.3 |
| CDX68977 | Canola | nucleus | 40.08 | 39.6 |
| CDY28302 | Canola | nucleus | 40.08 | 39.44 |
| CDX75353 | Canola | nucleus | 40.08 | 39.44 |
| CDY46114 | Canola | nucleus | 36.84 | 37.76 |
| CDX72405 | Canola | nucleus | 36.44 | 37.34 |
| CDY30264 | Canola | nucleus | 35.22 | 33.46 |
| CDY44415 | Canola | nucleus | 34.82 | 32.95 |
| CDX85443 | Canola | nucleus | 40.89 | 32.9 |
| CDY02687 | Canola | nucleus | 40.49 | 32.26 |
| CDY69058 | Canola | nucleus | 34.41 | 32.2 |
| CDY67808 | Canola | nucleus | 20.65 | 32.08 |
| CDY16884 | Canola | nucleus | 40.49 | 32.05 |
| CDX78761 | Canola | nucleus | 40.49 | 31.95 |
| CDX70776 | Canola | nucleus | 40.08 | 31.63 |
| CDX83109 | Canola | nucleus | 20.65 | 31.48 |
| CDY38460 | Canola | nucleus | 40.49 | 30.86 |
| CDY67868 | Canola | nucleus | 36.84 | 30.54 |
| CDY20004 | Canola | nucleus | 35.22 | 30.31 |
| CDY66025 | Canola | nucleus | 35.22 | 30.21 |
| CDY07345 | Canola | nucleus | 36.44 | 30.2 |
| CDY40941 | Canola | nucleus | 38.06 | 29.38 |
| CDY50737 | Canola | nucleus | 40.08 | 28.78 |
| CDX95921 | Canola | nucleus | 37.25 | 28.75 |
| CDY44993 | Canola | nucleus | 40.49 | 28.33 |
| CDY46444 | Canola | nucleus | 40.08 | 28.05 |
| CDY66170 | Canola | nucleus | 34.82 | 27.39 |
| CDX74436 | Canola | nucleus | 35.22 | 24.1 |
| CDY12830 | Canola | nucleus | 24.29 | 23.72 |
| CDY01420 | Canola | nucleus | 24.29 | 22.81 |
| CDY30608 | Canola | nucleus | 23.08 | 21.51 |
| CDX72621 | Canola | nucleus | 23.08 | 21.51 |
| CDY29542 | Canola | nucleus | 22.67 | 21.13 |
| CDY22442 | Canola | nucleus | 23.08 | 20.73 |
| CDY23023 | Canola | nucleus | 24.29 | 20.69 |
| CDX73963 | Canola | nucleus | 27.94 | 20.6 |
| CDY07907 | Canola | nucleus | 27.53 | 20.48 |
| CDY02098 | Canola | nucleus | 24.29 | 20.48 |
| CDY57355 | Canola | nucleus | 22.67 | 20.14 |
| CDY44045 | Canola | nucleus | 22.67 | 19.65 |
| CDY38933 | Canola | nucleus | 23.08 | 19.52 |
| CDX89554 | Canola | nucleus | 23.08 | 19.45 |
| CDX75635 | Canola | nucleus | 23.48 | 19.4 |
| CDX69287 | Canola | nucleus | 23.08 | 18.63 |
| CDY43567 | Canola | nucleus | 15.38 | 17.51 |
| CDX68566 | Canola | nucleus | 21.86 | 17.2 |
| CDX72208 | Canola | nucleus | 23.89 | 16.03 |
| CDY20494 | Canola | nucleus | 23.89 | 16.03 |
| CDY27271 | Canola | nucleus | 23.89 | 15.82 |
| CDX74825 | Canola | nucleus | 25.1 | 15.46 |
| CDY70901 | Canola | nucleus | 14.57 | 12.59 |
| CDY70773 | Canola | nucleus | 14.57 | 12.59 |
| CDX83108 | Canola | cytosol | 0.4 | 2.56 |
Protein Annotations
| EnsemblPlants:CDX81853 | EnsemblPlantsGene:GSBRNA2T00136799001 | Gene3D:1.10.10.60 | GO:A0A078D3H2 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF665 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX81853 | ProteinID:CDX81853.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE8F48 | MapMan:15.5.2.1 | : | : |
Description
BnaC08g37480D
Coordinates
chrLK031826:+:1115540..1116742
Molecular Weight (calculated)
28566.6 Da
IEP (calculated)
8.825
GRAVY (calculated)
-0.864
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEDEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRELS KLRPRDLGHD GTKAATIGYD GCDKKRRLAT ATTISYPHQF SHISHFQLLK EFLTGKIGLC NNTTPINEGA INQSKRPMEF YDFLQVKTDS
201: KKPEVLDNSR KYEEEDDVSE HNHNHNENCV PFIDFLSVGN SASQGLC
101: IMARRGRELS KLRPRDLGHD GTKAATIGYD GCDKKRRLAT ATTISYPHQF SHISHFQLLK EFLTGKIGLC NNTTPINEGA INQSKRPMEF YDFLQVKTDS
201: KKPEVLDNSR KYEEEDDVSE HNHNHNENCV PFIDFLSVGN SASQGLC
001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
Arabidopsis Description
MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.