Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26800702
|
gfp PMID:
26800702
doi
State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China jiangyq@nwafu.edu.cn., State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau and College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75635 | Canola | nucleus | 92.48 | 94.65 |
| Bra011749.1-P | Field mustard | nucleus | 98.37 | 91.77 |
| AT4G37260.1 | Thale cress | nucleus | 89.54 | 85.62 |
| CDY44045 | Canola | nucleus | 79.74 | 85.61 |
| CDY22442 | Canola | nucleus | 76.14 | 84.73 |
| CDY29542 | Canola | nucleus | 68.63 | 79.25 |
| CDX72621 | Canola | nucleus | 68.3 | 78.87 |
| CDY38933 | Canola | nucleus | 67.65 | 70.89 |
| CDX89554 | Canola | nucleus | 67.32 | 70.31 |
| KRH28419 | Soybean | nucleus | 55.23 | 56.9 |
| CDX83109 | Canola | nucleus | 29.74 | 56.17 |
| KRH77058 | Soybean | nucleus | 55.56 | 55.74 |
| CDY12830 | Canola | nucleus | 45.75 | 55.34 |
| CDY01420 | Canola | nucleus | 47.06 | 54.75 |
| CDY30608 | Canola | nucleus | 46.73 | 53.96 |
| KRH57983 | Soybean | nucleus | 51.63 | 53.56 |
| VIT_07s0129g01050.t01 | Wine grape | nucleus | 53.92 | 52.88 |
| CDY57355 | Canola | nucleus | 48.04 | 52.88 |
| VIT_18s0001g09850.t01 | Wine grape | nucleus | 52.61 | 51.44 |
| CDY23023 | Canola | nucleus | 47.71 | 50.34 |
| CDY02098 | Canola | nucleus | 47.06 | 49.15 |
| CDY43567 | Canola | nucleus | 33.99 | 47.93 |
| Solyc02g092930.1.1 | Tomato | nucleus | 54.58 | 46.26 |
| PGSC0003DMT400064306 | Potato | mitochondrion, nucleus | 55.88 | 46.09 |
| Zm00001d005300_P001 | Maize | nucleus | 42.81 | 45.96 |
| Os09t0106700-01 | Rice | nucleus | 47.71 | 45.77 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 49.67 | 45.37 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 49.02 | 44.64 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 49.02 | 43.73 |
| Zm00001d019712_P001 | Maize | nucleus | 47.39 | 42.03 |
| EER98550 | Sorghum | nucleus | 47.06 | 39.34 |
| CDX68566 | Canola | nucleus | 39.54 | 38.53 |
| CDX83108 | Canola | cytosol | 4.58 | 35.9 |
| HORVU5Hr1G049880.1 | Barley | plastid | 48.69 | 35.14 |
| CDY35992 | Canola | nucleus | 17.65 | 34.39 |
| CDY21728 | Canola | nucleus | 17.32 | 33.76 |
| CDX83880 | Canola | nucleus | 17.65 | 29.67 |
| CDY07907 | Canola | nucleus | 30.72 | 28.31 |
| CDX73963 | Canola | nucleus | 30.72 | 28.06 |
| CDY71713 | Canola | nucleus | 20.26 | 26.96 |
| CDX72405 | Canola | nucleus | 20.91 | 26.56 |
| CDX96475 | Canola | nucleus | 19.61 | 26.32 |
| CDX72988 | Canola | nucleus | 19.28 | 26.11 |
| CDY20494 | Canola | nucleus | 31.05 | 25.82 |
| CDY46114 | Canola | nucleus | 20.26 | 25.73 |
| CDY58312 | Canola | nucleus | 19.61 | 25.64 |
| CDY28302 | Canola | nucleus | 20.91 | 25.5 |
| CDX75353 | Canola | nucleus | 20.91 | 25.5 |
| CDX82074 | Canola | nucleus | 19.28 | 25.32 |
| CDX72208 | Canola | nucleus | 30.39 | 25.27 |
| CDY27271 | Canola | nucleus | 30.72 | 25.2 |
| CDX68977 | Canola | nucleus | 20.59 | 25.2 |
| CDY44415 | Canola | nucleus | 21.24 | 24.9 |
| CDY30264 | Canola | nucleus | 20.26 | 23.85 |
| CDX74825 | Canola | nucleus | 30.72 | 23.44 |
| CDX96742 | Canola | nucleus | 18.3 | 23.14 |
| CDY21727 | Canola | nucleus | 18.95 | 23.11 |
| CDY16884 | Canola | nucleus | 23.53 | 23.08 |
| CDX81853 | Canola | nucleus | 18.63 | 23.08 |
| CDY20004 | Canola | nucleus | 21.24 | 22.65 |
| CDY67808 | Canola | nucleus | 11.76 | 22.64 |
| CDY38460 | Canola | nucleus | 23.86 | 22.53 |
| CDY69058 | Canola | nucleus | 19.28 | 22.35 |
| CDY66025 | Canola | nucleus | 20.91 | 22.22 |
| CDY07345 | Canola | nucleus | 21.57 | 22.15 |
| CDX78761 | Canola | nucleus | 22.55 | 22.04 |
| CDX70776 | Canola | nucleus | 22.55 | 22.04 |
| CDX85443 | Canola | nucleus | 21.9 | 21.82 |
| CDY67868 | Canola | nucleus | 21.24 | 21.81 |
| CDY02687 | Canola | nucleus | 21.9 | 21.61 |
| CDY40941 | Canola | nucleus | 22.55 | 21.56 |
| CDX95921 | Canola | nucleus | 22.55 | 21.56 |
| CDY66170 | Canola | nucleus | 21.24 | 20.7 |
| CDY70901 | Canola | nucleus | 19.28 | 20.63 |
| CDY70773 | Canola | nucleus | 19.28 | 20.63 |
| CDY50737 | Canola | nucleus | 21.57 | 19.19 |
| CDY46444 | Canola | nucleus | 21.57 | 18.7 |
| CDY44993 | Canola | nucleus | 21.57 | 18.7 |
| CDX74436 | Canola | nucleus | 19.93 | 16.9 |
Protein Annotations
| EnsemblPlants:CDX69287 | EnsemblPlantsGene:GSBRNA2T00131111001 | Gene3D:1.10.10.60 | GO:A0A078BY82 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF691 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX69287 | ProteinID:CDX69287.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE99C8 | MapMan:15.5.2.1 | : |
Description
BnaC01g01660D
Coordinates
chrLK031789:+:3946130..3947347
Molecular Weight (calculated)
32825.2 Da
IEP (calculated)
8.130
GRAVY (calculated)
-0.682
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGPSRKNME RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFTA EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSGFTSE GQSCDFGGNG GYDGNLGEEQ PLKRTASGGG VSTGLYMSPG SPSGSDVSEQ SSGAPHVFKP TARSGAVTEV TASTSGEDPP
201: TYLSLSLPWN NRCETETVRV NEPTQVNENT GISGFGGEFM TVVQEMIRTE VRSYMADLQR GNVGGGGSSG GSGGGGGGSC MPQSVNSRRV GFREFIVNQI
301: GIGKME
101: AIKNHWNSTL KRKCSGFTSE GQSCDFGGNG GYDGNLGEEQ PLKRTASGGG VSTGLYMSPG SPSGSDVSEQ SSGAPHVFKP TARSGAVTEV TASTSGEDPP
201: TYLSLSLPWN NRCETETVRV NEPTQVNENT GISGFGGEFM TVVQEMIRTE VRSYMADLQR GNVGGGGSSG GSGGGGGGSC MPQSVNSRRV GFREFIVNQI
301: GIGKME
001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME
Arabidopsis Description
MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.