Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012910.1-P | Field mustard | nucleus | 98.29 | 98.29 |
| CDY23023 | Canola | nucleus | 96.59 | 97.59 |
| CDY57355 | Canola | nucleus | 77.82 | 82.01 |
| CDY30608 | Canola | nucleus | 71.67 | 79.25 |
| CDX83109 | Canola | nucleus | 43.69 | 79.01 |
| AT3G50060.1 | Thale cress | nucleus | 79.86 | 77.74 |
| CDY12830 | Canola | nucleus | 54.27 | 62.85 |
| CDY01420 | Canola | nucleus | 55.29 | 61.6 |
| CDX68566 | Canola | nucleus | 65.87 | 61.47 |
| CDY43567 | Canola | nucleus | 45.05 | 60.83 |
| CDX83108 | Canola | cytosol | 7.51 | 56.41 |
| CDY22442 | Canola | nucleus | 48.12 | 51.27 |
| KRH61351 | Soybean | nucleus | 45.05 | 50.97 |
| CDY29542 | Canola | nucleus | 46.08 | 50.94 |
| KRH05621 | Soybean | nucleus | 46.42 | 50.75 |
| CDX72621 | Canola | nucleus | 45.73 | 50.57 |
| KRH15420 | Soybean | nucleus | 46.76 | 50.18 |
| CDY44045 | Canola | nucleus | 48.46 | 49.82 |
| CDY38933 | Canola | nucleus | 49.15 | 49.32 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 45.05 | 49.07 |
| CDX89554 | Canola | nucleus | 48.81 | 48.81 |
| CDX75635 | Canola | nucleus | 48.81 | 47.83 |
| CDX69287 | Canola | nucleus | 49.15 | 47.06 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 45.39 | 45.86 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 44.03 | 45.74 |
| Zm00001d005300_P001 | Maize | nucleus | 44.03 | 45.26 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 44.37 | 45.14 |
| Os09t0106700-01 | Rice | nucleus | 47.1 | 43.26 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 44.71 | 43.23 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 39.25 | 43.23 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 44.37 | 43.05 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 43.34 | 42.76 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 41.98 | 42.71 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 47.78 | 41.79 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 41.98 | 41.55 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 47.1 | 41.07 |
| Zm00001d019712_P001 | Maize | nucleus | 47.78 | 40.58 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 47.44 | 40.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.91 | 40.28 |
| EER98550 | Sorghum | nucleus | 47.44 | 37.98 |
| CDY21728 | Canola | nucleus | 18.77 | 35.03 |
| CDY35992 | Canola | nucleus | 18.09 | 33.76 |
| HORVU5Hr1G049880.1 | Barley | plastid | 46.08 | 31.84 |
| CDX83880 | Canola | nucleus | 18.77 | 30.22 |
| CDX72988 | Canola | nucleus | 22.18 | 28.76 |
| CDX96475 | Canola | nucleus | 22.18 | 28.51 |
| CDY71713 | Canola | nucleus | 22.18 | 28.26 |
| CDY58312 | Canola | nucleus | 22.53 | 28.21 |
| CDX82074 | Canola | nucleus | 21.84 | 27.47 |
| CDX73963 | Canola | nucleus | 30.03 | 26.27 |
| CDY07907 | Canola | nucleus | 29.69 | 26.2 |
| CDY46114 | Canola | nucleus | 21.16 | 25.73 |
| CDX72405 | Canola | nucleus | 21.16 | 25.73 |
| CDY44415 | Canola | nucleus | 22.87 | 25.67 |
| CDX68977 | Canola | nucleus | 21.84 | 25.6 |
| CDX75353 | Canola | nucleus | 21.84 | 25.5 |
| CDY28302 | Canola | nucleus | 21.84 | 25.5 |
| CDX81853 | Canola | nucleus | 20.48 | 24.29 |
| CDX96742 | Canola | nucleus | 19.8 | 23.97 |
| CDX72208 | Canola | nucleus | 30.03 | 23.91 |
| CDY27271 | Canola | nucleus | 30.38 | 23.86 |
| CDY30264 | Canola | nucleus | 20.82 | 23.46 |
| CDY20494 | Canola | nucleus | 29.35 | 23.37 |
| CDY07345 | Canola | nucleus | 23.55 | 23.15 |
| CDY21727 | Canola | nucleus | 19.8 | 23.11 |
| CDY20004 | Canola | nucleus | 22.18 | 22.65 |
| CDY66025 | Canola | nucleus | 22.18 | 22.57 |
| CDY67868 | Canola | nucleus | 22.87 | 22.48 |
| CDX95921 | Canola | nucleus | 23.89 | 21.88 |
| CDX74825 | Canola | nucleus | 29.35 | 21.45 |
| CDY67808 | Canola | nucleus | 11.6 | 21.38 |
| CDY40941 | Canola | nucleus | 23.21 | 21.25 |
| CDY69058 | Canola | nucleus | 19.11 | 21.21 |
| CDY16884 | Canola | nucleus | 22.18 | 20.83 |
| CDY66170 | Canola | nucleus | 22.18 | 20.7 |
| CDY38460 | Canola | nucleus | 22.53 | 20.37 |
| CDY02687 | Canola | nucleus | 21.5 | 20.32 |
| CDX85443 | Canola | nucleus | 21.16 | 20.2 |
| CDX78761 | Canola | nucleus | 20.82 | 19.49 |
| CDX70776 | Canola | nucleus | 20.82 | 19.49 |
| CDY50737 | Canola | nucleus | 22.18 | 18.9 |
| CDY70773 | Canola | nucleus | 18.43 | 18.88 |
| CDY70901 | Canola | nucleus | 18.43 | 18.88 |
| CDY44993 | Canola | nucleus | 22.18 | 18.41 |
| CDY46444 | Canola | nucleus | 22.18 | 18.41 |
| CDX74436 | Canola | nucleus | 20.82 | 16.9 |
Protein Annotations
| EnsemblPlants:CDY02098 | EnsemblPlantsGene:GSBRNA2T00113479001 | Gene3D:1.10.10.60 | GO:A0A078ERF0 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF691 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY02098 | ProteinID:CDY02098.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EED246 | MapMan:15.5.2.1 | : |
Description
BnaA03g40690D
Coordinates
chrLK031932:+:110752..111760
Molecular Weight (calculated)
32207.9 Da
IEP (calculated)
5.565
GRAVY (calculated)
-0.583
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRVKGPWS EEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIL SARAKFGNRW ATIARLLNGR TDNAVKNHWN
101: STLKRKFVGG GGGGDCDLVV VTAEGDRRKK RRSVSSESAP LVDTGLYMSP ESPTGDSDCS TIPSPVAAQL FKPMPVSGGF TVPSPVEMSS SEEDPATSLS
201: LSLSLPGADV SQESRNSSLL FPRFESQMKI INVEESEEGR RGEFMRVVQE MIKAEVRSYM SEIQINSGGF VVGGLYETGN GGFRDSGFVT KVE
101: STLKRKFVGG GGGGDCDLVV VTAEGDRRKK RRSVSSESAP LVDTGLYMSP ESPTGDSDCS TIPSPVAAQL FKPMPVSGGF TVPSPVEMSS SEEDPATSLS
201: LSLSLPGADV SQESRNSSLL FPRFESQMKI INVEESEEGR RGEFMRVVQE MIKAEVRSYM SEIQINSGGF VVGGLYETGN GGFRDSGFVT KVE
001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E
Arabidopsis Description
MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.