CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02575
KRH06026
KRH09813
KRH09878
KRH12587
KRH19355
KRH23441
KRH23504
KRH26266
KRH37536
KRH44390
KRH47514
KRH51289

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50060.1	KRH06026	AT1G59750.1	17675404
AT3G50060.1	KRH26266	AT1G59750.1	17675404
AT3G50060.1	KRH51289	AT1G59750.1	17675404
AT3G50060.1	KRH09813	AT3G15540.1	17675404
AT3G50060.1	KRH23504	AT3G15540.1	17675404
AT3G50060.1	KRH44390	AT3G15540.1	17675404
AT3G50060.1	KRH47514	AT3G15540.1	17675404
AT3G50060.1	KRH09878	AT3G16120.1	21798944
AT3G50060.1	KRH23441	AT3G16120.1	21798944
AT3G50060.1	KRH02575	AT5G20730.1	17675404
AT3G50060.1	KRH12587	AT5G20730.1	17675404
AT3G50060.1	KRH19355	AT5G20730.1	17675404
AT3G50060.1	KRH37536	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15420	Soybean	nucleus	86.57	84.98
KRH61351	Soybean	nucleus	60.07	62.16
GSMUA_Achr4P20150_001	Banana	nucleus	56.72	56.51
KRH77058	Soybean	nucleus	60.45	53.11
KRH57983	Soybean	nucleus	58.21	52.88
KRH28419	Soybean	nucleus	58.21	52.53
Zm00001d005300_P001	Maize	nucleus	55.6	52.28
GSMUA_Achr9P22600_001	Banana	nucleus	55.97	52.08
GSMUA_Achr3P13070_001	Banana	nucleus	55.97	51.72
CDY12830	Canola	nucleus	48.13	50.99
GSMUA_Achr4P12950_001	Banana	nucleus	49.25	49.62
Os09t0106700-01	Rice	nucleus	58.96	49.53
GSMUA_Achr1P09750_001	Banana	nucleus	54.85	49.49
GSMUA_Achr1P26140_001	Banana	nucleus	51.87	49.29
Bra036048.1-P	Field mustard	nucleus	48.51	48.87
CDY30608	Canola	nucleus	48.13	48.68
CDY01420	Canola	nucleus	47.76	48.67
TraesCS5B01G157300.1	Wheat	nucleus	60.07	48.06
GSMUA_Achr4P09450_001	Banana	nucleus	54.1	48.01
TraesCS5A01G159600.1	Wheat	nucleus	60.07	47.92
AT5G67300.1	Thale cress	nucleus	54.48	47.87
Bra012149.1-P	Field mustard	nucleus	52.61	47.64
CDY23023	Canola	nucleus	51.49	47.59
CDY57355	Canola	nucleus	49.25	47.48
TraesCS5D01G164600.1	Wheat	nucleus	60.07	46.94
AT3G50060.1	Thale cress	nucleus	52.24	46.51
CDY02098	Canola	nucleus	50.75	46.42
VIT_03s0180g00210.t01	Wine grape	nucleus	52.24	46.2
Bra012910.1-P	Field mustard	nucleus	50.37	46.08
GSMUA_Achr3P28230_001	Banana	nucleus	49.25	45.83
Bra029990.1-P	Field mustard	nucleus	50.0	45.58
KRH61246	Soybean	nucleus	35.45	45.24
GSMUA_AchrUn_...	Banana	nucleus	47.76	45.23
KRH37830	Soybean	nucleus	23.88	45.07
Zm00001d019712_P001	Maize	nucleus	57.46	44.64
EER98550	Sorghum	nucleus	59.33	43.44
GSMUA_Achr8P25220_001	Banana	nucleus	47.76	43.24
KRH51945	Soybean	nucleus	35.45	42.99
KRH14928	Soybean	nucleus	36.94	41.6
KRH73284	Soybean	nucleus	36.57	39.68
CDX68566	Canola	nucleus	44.78	38.22
KRH05732	Soybean	nucleus	35.07	38.06
HORVU5Hr1G049880.1	Barley	plastid	58.96	37.26
KRG94450	Soybean	nucleus	17.91	30.38
KRH09502	Soybean	nucleus	25.0	28.63
KRH38975	Soybean	nucleus	24.63	27.85
KRH75766	Soybean	nucleus	35.45	27.14
KRH15916	Soybean	nucleus	24.25	26.86
KRG88785	Soybean	nucleus	35.07	26.7
KRH15016	Soybean	nucleus	34.7	23.66
KRH53362	Soybean	nucleus	28.36	22.96
KRH64569	Soybean	nucleus	28.73	22.78
KRH73115	Soybean	nucleus	32.46	21.8
KRG94926	Soybean	nucleus	26.87	19.05
KRH64970	Soybean	nucleus	26.87	17.78
KRH50566	Soybean	nucleus	27.61	16.97
KRH70748	Soybean	nucleus	28.36	16.27
KRH74887	Soybean	plastid	27.61	15.91
KRG89586	Soybean	nucleus	26.49	14.61

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EMBL:ACUP02010764	EnsemblPlantsGene:GLYMA_17G237900	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	UniProt:I1MXK2	InterPro:IPR017930	EnsemblPlants:KRH05621	ProteinID:KRH05621	ProteinID:KRH05621.1
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF940	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001B36A90	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:39325886..39328062

Molecular Weight (calculated)

29234.7 Da

IEP (calculated)

10.382

GRAVY (calculated)

-0.647

Length

268 amino acids

Sequence
(BLAST)

001: MDRVKGPWSP EEDEALRRLV QAHGPRNWSV ISKSVPGRSG KSCRLRWCNQ LSPQVAHRPF SPDEDEAIVR AHARFGNKWA TIARLLNNGR TDNAVKNHWN
101: STLKRKKCSA VSDDVTDRPP LKRSASVGPA HLNPGSPSGS DLSDPSLPAL SNPSPSAHYR PNLMETASSA CDPATSLSLS LPGFGSGSNP VCAPRPVSVS
201: PPSPPPAEPV EQRGKQMFNA EFLRVMQEMI RKEVRSYMSG MEQKNGFRIP TEAIGNAVVK RMGISNIE

Best Arabidopsis Sequence Match ( AT5G67300.1 )
(BLAST)

001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE

Arabidopsis Description

MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.