CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61246	Soybean	nucleus	55.06	64.76
KRH51945	Soybean	nucleus	54.66	61.09
KRH37830	Soybean	nucleus	31.58	54.93
VIT_18s0001g11170.t01	Wine grape	nucleus	48.99	52.84
Solyc04g079360.1.1	Tomato	nucleus	51.42	50.4
PGSC0003DMT400020635	Potato	nucleus	51.01	50.2
KRH14928	Soybean	nucleus	34.82	36.13
KRH61351	Soybean	nucleus	36.84	35.14
KRH05621	Soybean	nucleus	38.06	35.07
KRH15420	Soybean	nucleus	38.06	34.43
KRH73284	Soybean	nucleus	34.41	34.41
KRH28419	Soybean	nucleus	38.46	31.99
KRH57983	Soybean	nucleus	38.06	31.86
KRH77058	Soybean	nucleus	38.06	30.82
KRG94450	Soybean	nucleus	17.81	27.85
KRH09502	Soybean	nucleus	24.29	25.64
KRH38975	Soybean	nucleus	24.29	25.32
KRH15916	Soybean	nucleus	22.27	22.73
KRH75766	Soybean	nucleus	31.58	22.29
KRG88785	Soybean	nucleus	31.58	22.16
KRH15016	Soybean	nucleus	33.6	21.12
KRH53362	Soybean	nucleus	25.51	19.03
KRH64569	Soybean	nucleus	25.51	18.64
KRH73115	Soybean	nucleus	29.55	18.3
KRG94926	Soybean	nucleus	25.91	16.93
KRH64970	Soybean	nucleus	25.91	15.8
KRH50566	Soybean	nucleus	27.53	15.6
KRH74887	Soybean	plastid	26.32	13.98
KRH70748	Soybean	nucleus	26.32	13.92
KRG89586	Soybean	nucleus	27.13	13.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100802503	MapMan:15.5.2.1	EMBL:ACUP02010776	EnsemblPlantsGene:GLYMA_17G245200	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7MNR7	EnsemblPlants:KRH05732	ProteinID:KRH05732
ProteinID:KRH05732.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF611
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000295C81E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:40073872..40074851

Molecular Weight (calculated)

27738.6 Da

IEP (calculated)

10.441

GRAVY (calculated)

-0.813

Length

247 amino acids

Sequence
(BLAST)

001: MNLTHFPLHI YNFPDNHHSS KCHTLKHKQT PKKEKMKAMK RCSSSSSSSY SSASESTPQS NQNKNSNNFC YKIKGPWSAK EDRILTGLVE AHGPRNWASI
101: SRHIKGRSGK SCRLRWCNQL SPTVEHRPFS TREDEVILHA HARFGNKWAT IARMLPGRTD NAVKNHWNAT LKRRRFGADV VVEDDPLTAL TLAPPGSGCC
201: GRGEERRGVS PAGFWDAMRD VVAREVRGYV SSSFSDNLAS NEGLSKY

Best Arabidopsis Sequence Match ( AT2G23290.1 )
(BLAST)

001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE

Arabidopsis Description

AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.