Factsheet for Solyc04g079360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020635	Potato	nucleus	97.62	98.01
VIT_18s0001g11170.t01	Wine grape	nucleus	62.3	68.56
KRH61246	Soybean	nucleus	53.57	64.29
KRH37830	Soybean	nucleus	35.71	63.38
KRH51945	Soybean	nucleus	54.76	62.44
KRH05732	Soybean	nucleus	50.4	51.42
Solyc04g078420.1.1	Tomato	nucleus	40.87	31.4
Solyc02g092930.1.1	Tomato	nucleus	41.27	28.81
Solyc09g011780.2.1	Tomato	nucleus	36.9	24.47
Solyc05g052850.2.1	Tomato	nucleus	32.94	22.19
Solyc10g081320.1.1	Tomato	nucleus	26.59	21.0
Solyc04g064540.2.1	Tomato	nucleus	25.4	20.71
Solyc05g007870.1.1	Tomato	nucleus	28.17	17.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4BV20	InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF611
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc04g079360.1	EnsemblPlants:Solyc04g079360.1.1	UniParc:UPI0002766FEA
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:63888688..63889446

Molecular Weight (calculated)

27919.4 Da

IEP (calculated)

8.702

GRAVY (calculated)

-0.780

Length

252 amino acids

Sequence
(BLAST)

001: MDFFNRCSTS SSSSESSSSE SSLSGKNPNK SERIKGPWSA EEDKILTKLV ERYGARNWSL ISKYIKGRSG KSCRLRWCNQ LSPNVEHRPF SPAEDEAILA
101: AHAKYGNRWA TIARLLPGRT DNAVKNHWNS TLKRRYQQLI QQQNQNPVGF SDVKINGSGS GSGSGFGSCM EYLNVDESPK VNNNNNNYAV TNNCSGEFDD
201: PMTTLSLAPP GMSGDELPEK KTESFPAGFW DVMRGVIARE VREYVASTGF PN

Best Arabidopsis Sequence Match ( AT3G50060.1 )
(BLAST)

001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E

Arabidopsis Description

MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.