Factsheet for Solyc05g007870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047415	Potato	nucleus	94.72	92.07
Os08t0435700-00	Rice	nucleus	28.3	45.74
GSMUA_Achr11P...	Banana	nucleus	28.78	43.64
CDY67868	Canola	nucleus	29.98	41.95
Bra003995.1-P	Field mustard	nucleus	29.74	41.75
CDY07345	Canola	nucleus	29.74	41.61
Solyc10g081320.1.1	Tomato	nucleus	31.18	40.75
GSMUA_Achr6P02580_001	Banana	nucleus	33.81	39.83
GSMUA_Achr5P23290_001	Banana	nucleus	28.54	39.4
CDY40941	Canola	nucleus	30.22	39.38
Bra004394.1-P	Field mustard	nucleus	30.22	39.38
CDX95921	Canola	nucleus	29.98	39.06
AT1G69560.2	Thale cress	nucleus	31.65	38.15
CDY50737	Canola	nucleus	31.41	38.08
CDY46444	Canola	nucleus	32.13	37.96
Bra016285.1-P	Field mustard	nucleus	32.13	37.96
CDY44993	Canola	nucleus	31.65	37.39
AT1G26780.2	Thale cress	nucleus	31.89	37.05
TraesCS3B01G473600.1	Wheat	nucleus	31.18	36.72
Solyc04g064540.2.1	Tomato	nucleus	27.1	36.57
TraesCS3D01G432300.2	Wheat	nucleus	30.94	36.44
TraesCS3A01G439500.1	Wheat	nucleus	30.46	35.88
Zm00001d032194_P002	Maize	nucleus, plastid	32.61	35.6
KRH50566	Soybean	nucleus	36.93	35.32
VIT_01s0026g02600.t01	Wine grape	nucleus	38.13	34.79
KRH74887	Soybean	plastid	37.65	33.76
KRH70748	Soybean	nucleus	36.45	32.55
KRG89586	Soybean	nucleus	36.45	31.28
HORVU3Hr1G096010.6	Barley	nucleus	28.3	30.89
VIT_14s0108g01010.t01	Wine grape	nucleus	33.81	29.62
Solyc04g079360.1.1	Tomato	nucleus	17.03	28.17
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	30.94	27.45
Solyc04g078420.1.1	Tomato	nucleus	16.55	21.04
OQU80507	Sorghum	nucleus	34.29	20.94
Solyc02g092930.1.1	Tomato	nucleus	16.79	19.39
Solyc05g052850.2.1	Tomato	nucleus	17.27	19.25
Solyc09g011780.2.1	Tomato	nucleus	17.27	18.95
Os08t0435725-00	Rice	cytosol	2.88	12.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ProteinID:AGI17582.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:K4BWW2	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF697	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc05g007870.1	EnsemblPlants:Solyc05g007870.1.1
UniParc:UPI000276607C	SEG:seg	:	:	:	:

Description

R2R3 MYB [Source:UniProtKB/TrEMBL;Acc:K4BWW2]

Coordinates

chr5:+:2312616..2314591

Molecular Weight (calculated)

46564.9 Da

IEP (calculated)

7.552

GRAVY (calculated)

-0.818

Length

417 amino acids

Sequence
(BLAST)

001: MSSTSSSCSC SPMGTSMGMF FADMNSLSIN TPESLDEGKG RRGSWDFQFL NKGGSFFSSR SLDEAQNSEE NNESIDLNAS CFNDEKQITM HTTFNSNNNS
101: SSSGCNGKET ENGQSKLCAR GHWRPAEDAK LKELVAIYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFSEEEE ERLMAAHRLY GNKWAMIARL
201: FPGRTDNAVK NHWHVIMARK YREQSSAYRR RKMGQFVYRR STTTVVEEAD NSSGQNSVNH FSMKMNNNNG PNGWVVYGPN GSPHMAASAG EAATPSSTNN
301: VPLYSPYSPF AAPPFDSLPA GHCGNEMINV LNQQGGRSWD RQREVTHQHP SNSLMMMNNM QQDQSQYVLQ FPYVTQISSS PSTTEQGLVK EDKRSNNNSD
401: NTTIAPPFID FLGVGAT

Best Arabidopsis Sequence Match ( AT1G69560.1 )
(BLAST)

001: MEMVHADVAS LSITPCFPSS LSSSSHHHYN QQQHCIMSED QHHSMDQTTS SDYFSLNIDN AQHLRSYYTS HREEDMNPNL SDYSNCNKKD TTVYRSCGHS
101: SKASVSRGHW RPAEDTKLKE LVAVYGPQNW NLIAEKLQGR SGKSCRLRWF NQLDPRINRR AFTEEEEERL MQAHRLYGNK WAMIARLFPG RTDNSVKNHW
201: HVIMARKFRE QSSSYRRRKT MVSLKPLINP NPHIFNDFDP TRLALTHLAS SDHKQLMLPV PCFPGYDHEN ESPLMVDMFE TQMMVGDYIA WTQEATTFDF
301: LNQTGKSEIF ERINEEKKPP FFDFLGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.