Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46444 | Canola | nucleus | 81.89 | 83.29 |
| Bra016285.1-P | Field mustard | nucleus | 81.89 | 83.29 |
| CDY50737 | Canola | nucleus | 79.11 | 82.56 |
| CDY44993 | Canola | nucleus | 80.78 | 82.15 |
| AT1G69560.2 | Thale cress | nucleus | 50.7 | 52.6 |
| Os08t0435700-00 | Rice | nucleus | 30.36 | 42.25 |
| AT1G73410.1 | Thale cress | nucleus | 27.86 | 41.15 |
| AT5G39700.1 | Thale cress | nucleus | 21.17 | 40.0 |
| AT1G17950.1 | Thale cress | nucleus | 27.3 | 39.36 |
| AT4G33450.1 | Thale cress | nucleus | 25.91 | 37.2 |
| GSMUA_Achr6P02580_001 | Banana | nucleus | 35.93 | 36.44 |
| GSMUA_Achr5P23290_001 | Banana | nucleus | 30.08 | 35.76 |
| TraesCS3B01G473600.1 | Wheat | nucleus | 33.15 | 33.62 |
| TraesCS3D01G432300.2 | Wheat | nucleus | 32.87 | 33.33 |
| TraesCS3A01G439500.1 | Wheat | nucleus | 32.87 | 33.33 |
| AT5G17800.1 | Thale cress | nucleus | 29.8 | 33.13 |
| AT3G29020.2 | Thale cress | nucleus | 28.13 | 33.11 |
| Zm00001d032194_P002 | Maize | nucleus, plastid | 34.54 | 32.46 |
| KRH50566 | Soybean | nucleus | 39.28 | 32.34 |
| VIT_01s0026g02600.t01 | Wine grape | nucleus | 40.95 | 32.17 |
| Solyc05g007870.1.1 | Tomato | nucleus | 37.05 | 31.89 |
| PGSC0003DMT400047415 | Potato | nucleus | 36.77 | 30.77 |
| KRH74887 | Soybean | plastid | 38.44 | 29.68 |
| HORVU3Hr1G096010.6 | Barley | nucleus | 31.48 | 29.58 |
| KRH70748 | Soybean | nucleus | 38.16 | 29.34 |
| KRG89586 | Soybean | nucleus | 39.28 | 29.01 |
| GSMUA_Achr7P18390_001 | Banana | nucleus, plastid | 32.87 | 25.11 |
| AT3G50060.1 | Thale cress | nucleus | 19.22 | 22.92 |
| AT5G67300.1 | Thale cress | nucleus | 18.38 | 21.64 |
| AT2G23290.1 | Thale cress | nucleus | 18.11 | 21.04 |
| AT4G37260.1 | Thale cress | nucleus | 17.55 | 19.69 |
| AT3G09230.1 | Thale cress | nucleus | 20.06 | 18.32 |
| AT2G39880.1 | Thale cress | nucleus | 18.66 | 18.26 |
| OQU80507 | Sorghum | nucleus | 34.54 | 18.16 |
| AT3G55730.1 | Thale cress | nucleus | 18.66 | 16.79 |
| Os08t0435725-00 | Rice | cytosol | 1.95 | 7.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:839219 | UniProt:A0A178WCI3 | ProteinID:AAF87032.1 | ProteinID:AEE30735.1 |
| ProteinID:AEE30736.1 | EMBL:AF334816 | ArrayExpress:AT1G26780 | EnsemblPlantsGene:AT1G26780 | RefSeq:AT1G26780 | TAIR:AT1G26780 |
| RefSeq:AT1G26780-TAIR-G | EnsemblPlants:AT1G26780.2 | TAIR:AT1G26780.2 | EMBL:AY519559 | EMBL:DQ446291 | EMBL:DQ652862 |
| GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010199 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | Symbol:MYB117 | InterPro:Myb_dom | RefSeq:NP_001154369.1 |
| RefSeq:NP_564261.1 | ProteinID:OAP15083.1 | PFAM:PF00249 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0025022 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF473 | UniProt:Q9LQX5 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A4E87 | SEG:seg | : | : |
Description
MYB117MYB117 [Source:UniProtKB/TrEMBL;Acc:A0A178WCI3]
Coordinates
chr1:+:9270952..9272713
Molecular Weight (calculated)
41536.5 Da
IEP (calculated)
7.065
GRAVY (calculated)
-0.847
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MFITEKQVWM DEIVARRASS SWDFPFNDIN IHQHHHRHCN TSHEFEILKS PLGDVAVHEE ESNNNNPNFS NSESGKKETT DSGQSWSSSS SKPSVLGRGH
101: WRPAEDVKLK ELVSIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNSVKNH WHVVMARKYR
201: EHSSAYRRRK LMSNNPLKPH LTNNHHPNPN PNYHSFISTN HYFAQPFPEF NLTHHLVNNA PITSDHNQLV LPFHCFQGYE NNEPPMVVSM FGNQMMVGDN
301: VGATSDALCN IPHIDPSNQE KPEPNDAMHW IGMDAVDEEV FEKAKQQPHF FDFLGLGTA
101: WRPAEDVKLK ELVSIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNSVKNH WHVVMARKYR
201: EHSSAYRRRK LMSNNPLKPH LTNNHHPNPN PNYHSFISTN HYFAQPFPEF NLTHHLVNNA PITSDHNQLV LPFHCFQGYE NNEPPMVVSM FGNQMMVGDN
301: VGATSDALCN IPHIDPSNQE KPEPNDAMHW IGMDAVDEEV FEKAKQQPHF FDFLGLGTA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.