Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83880 | Canola | nucleus | 65.46 | 89.56 |
| CDY21728 | Canola | nucleus | 55.82 | 88.53 |
| CDY35992 | Canola | nucleus | 54.62 | 86.62 |
| CDX96742 | Canola | nucleus | 83.53 | 85.95 |
| Bra016575.1-P | Field mustard | nucleus | 83.53 | 85.95 |
| CDX81853 | Canola | nucleus | 84.74 | 85.43 |
| Bra031008.1-P | Field mustard | nucleus | 83.53 | 84.21 |
| CDY21727 | Canola | nucleus | 82.33 | 81.67 |
| AT1G73410.1 | Thale cress | nucleus | 64.26 | 65.84 |
| VIT_17s0000g01890.t01 | Wine grape | nucleus | 53.41 | 60.18 |
| KRH09502 | Soybean | nucleus | 54.22 | 57.69 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 47.39 | 56.19 |
| KRH38975 | Soybean | nucleus | 53.41 | 56.12 |
| PGSC0003DMT400079714 | Potato | nucleus | 51.0 | 52.05 |
| EER93554 | Sorghum | nucleus | 48.19 | 50.21 |
| Os03t0720800-01 | Rice | nucleus | 48.19 | 48.98 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 47.79 | 48.97 |
| Zm00001d013399_P001 | Maize | nucleus | 46.59 | 48.33 |
| Zm00001d033815_P001 | Maize | nucleus | 47.79 | 47.98 |
| TraesCS4B01G052400.2 | Wheat | nucleus | 46.59 | 46.59 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 44.98 | 44.8 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 46.99 | 42.39 |
| AT4G33450.1 | Thale cress | nucleus | 39.36 | 39.2 |
| AT5G39700.1 | Thale cress | nucleus | 26.51 | 34.74 |
| AT5G17800.1 | Thale cress | nucleus | 40.56 | 31.27 |
| AT1G69560.2 | Thale cress | nucleus | 40.96 | 29.48 |
| AT3G29020.2 | Thale cress | nucleus | 34.14 | 27.87 |
| AT1G26780.2 | Thale cress | nucleus | 39.36 | 27.3 |
| AT5G67300.1 | Thale cress | nucleus | 24.5 | 20.0 |
| AT3G50060.1 | Thale cress | nucleus | 23.69 | 19.6 |
| AT2G23290.1 | Thale cress | nucleus | 23.29 | 18.77 |
| AT4G37260.1 | Thale cress | nucleus | 22.89 | 17.81 |
| AT3G09230.1 | Thale cress | nucleus | 27.31 | 17.3 |
| AT2G39880.1 | Thale cress | nucleus | 25.3 | 17.17 |
| AT3G55730.1 | Thale cress | nucleus | 23.29 | 14.54 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:838374 | ProteinID:AAF97274.1 | ProteinID:AEE29655.1 | EMBL:AF062888 |
| ArrayExpress:AT1G17950 | EnsemblPlantsGene:AT1G17950 | RefSeq:AT1G17950 | TAIR:AT1G17950 | RefSeq:AT1G17950-TAIR-G | EnsemblPlants:AT1G17950.1 |
| TAIR:AT1G17950.1 | Symbol:ATMYB52 | EMBL:AY086672 | EMBL:AY519554 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009414 |
| GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009834 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0071555 | GO:GO:1901347 | GO:GO:1901348 |
| GO:GO:1902074 | GO:GO:2000652 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_173237.1 |
| PFAM:PF00249 | PO:PO:0000230 | PO:PO:0000272 | PO:PO:0005352 | PO:PO:0005848 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009029 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 |
| PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF665 | UniProt:Q6R0C4 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0000162DDC | : | : | : | : |
Description
MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
Coordinates
chr1:+:6177481..6179289
Molecular Weight (calculated)
28927.1 Da
IEP (calculated)
9.029
GRAVY (calculated)
-0.833
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.