Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93554 | Sorghum | nucleus | 87.9 | 91.21 |
| Zm00001d013399_P001 | Maize | nucleus | 84.27 | 87.08 |
| Os03t0720800-01 | Rice | nucleus | 77.02 | 77.96 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 76.21 | 77.78 |
| TraesCS4B01G052400.2 | Wheat | nucleus | 75.0 | 74.7 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 75.0 | 74.4 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 74.6 | 67.03 |
| CDY35992 | Canola | nucleus | 39.11 | 61.78 |
| CDY21728 | Canola | nucleus | 38.31 | 60.51 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 50.81 | 60.0 |
| VIT_17s0000g01890.t01 | Wine grape | nucleus | 50.81 | 57.01 |
| CDX83880 | Canola | nucleus | 41.13 | 56.04 |
| KRH38975 | Soybean | nucleus | 50.4 | 52.74 |
| KRH09502 | Soybean | nucleus | 48.79 | 51.71 |
| PGSC0003DMT400079714 | Potato | nucleus | 49.19 | 50.0 |
| Zm00001d004681_P001 | Maize | nucleus | 38.31 | 49.74 |
| CDX96742 | Canola | nucleus | 48.39 | 49.59 |
| CDX72988 | Canola | nucleus | 44.76 | 49.12 |
| Bra031008.1-P | Field mustard | nucleus | 48.79 | 48.99 |
| Bra016575.1-P | Field mustard | nucleus | 47.58 | 48.76 |
| Bra015992.1-P | Field mustard | nucleus | 44.76 | 48.68 |
| CDX96475 | Canola | nucleus | 44.76 | 48.68 |
| CDX81853 | Canola | nucleus | 48.39 | 48.58 |
| CDY21727 | Canola | nucleus | 48.79 | 48.21 |
| CDX82074 | Canola | nucleus | 45.16 | 48.07 |
| AT1G17950.1 | Thale cress | nucleus | 47.98 | 47.79 |
| CDY58312 | Canola | nucleus | 44.35 | 47.01 |
| Bra008096.1-P | Field mustard | nucleus | 44.35 | 47.01 |
| AT1G73410.1 | Thale cress | nucleus | 45.97 | 46.91 |
| Zm00001d041818_P001 | Maize | nucleus | 38.31 | 42.22 |
| Zm00001d049079_P001 | Maize | nucleus | 41.53 | 37.18 |
| Zm00001d040426_P001 | Maize | nucleus | 40.32 | 35.97 |
| Zm00001d008251_P002 | Maize | nucleus | 41.53 | 34.45 |
| Zm00001d040423_P001 | Maize | nucleus | 41.13 | 34.23 |
| Zm00001d040428_P001 | Maize | nucleus | 35.89 | 31.45 |
| Zm00001d032194_P002 | Maize | nucleus, plastid | 42.34 | 27.49 |
| Zm00001d015614_P001 | Maize | nucleus | 28.23 | 23.03 |
| Zm00001d005300_P001 | Maize | nucleus | 25.81 | 22.46 |
| Zm00001d041935_P001 | Maize | nucleus | 23.39 | 21.97 |
| Zm00001d036768_P001 | Maize | nucleus | 26.21 | 21.1 |
| Zm00001d046632_P001 | Maize | nucleus | 25.81 | 21.05 |
| Zm00001d019712_P001 | Maize | nucleus | 27.02 | 19.42 |
| Zm00001d037999_P001 | Maize | nucleus | 19.76 | 16.84 |
| Zm00001d037994_P001 | Maize | nucleus | 24.19 | 16.26 |
| Zm00001d012379_P001 | Maize | nucleus | 25.4 | 15.71 |
| Zm00001d037998_P001 | Maize | nucleus | 18.95 | 14.64 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:103643927 | MapMan:15.5.2.1 | UniProt:A0A060D2F6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EMBL:KJ728191 | InterPro:Myb_dom |
| ProteinID:ONM08696.1 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF578 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002218B27 | EnsemblPlantsGene:Zm00001d033815 | EnsemblPlants:Zm00001d033815_P001 | EnsemblPlants:Zm00001d033815_T001 |
| SEG:seg | : | : | : | : | : |
Description
MYB-transcription factor 77myb domain protein 52
Coordinates
chr1:+:274393280..274395337
Molecular Weight (calculated)
27840.3 Da
IEP (calculated)
8.236
GRAVY (calculated)
-0.829
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTRGHWRPS EDEKLKELVA LYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRSPFS EEEEELLLAS HRVHGNRWAV IARLFPGRTD NAVKNHWHVI
101: MARRCRERMR LSNRRAGGAA AAGAGAVVVA TGAAAEDGSN PRSANKKPRP DASGMASLLD KYRREFSAVP FAINHDSNQQ QGYCSNTNED ANKSVEFYDF
201: LQVNANSSDT KCGSSIEEQE AESRDDDQAE GQVQFIDFLE VGASHRRR
101: MARRCRERMR LSNRRAGGAA AAGAGAVVVA TGAAAEDGSN PRSANKKPRP DASGMASLLD KYRREFSAVP FAINHDSNQQ QGYCSNTNED ANKSVEFYDF
201: LQVNANSSDT KCGSSIEEQE AESRDDDQAE GQVQFIDFLE VGASHRRR
001: MIMCSRGHWR PAEDEKLKDL VEQYGPHNWN AIALKLPGRS GKSCRLRWFN QLDPRINRNP FTEEEEERLL AAHRIHGNRW SIIARLFPGR TDNAVKNHWH
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
101: VIMARRTRQT SKPRLLPSTT SSSSLMASEQ IMMSSGGYNH NYSSDDRKKI FPADFINFPY KFSHINHLHF LKEFFTGKIA LNHKANQSKK PMEFYNFLQV
201: NTDSNKSEII DQDSGQSKRS DSDTKHESHV PFFDFLSVGN SAS
Arabidopsis Description
ATMYB54MYB54 [Source:UniProtKB/TrEMBL;Acc:A0A178WGB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.