Factsheet for Zm00001d037994_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18041	Sorghum	nucleus	55.83	57.7
CDX83109	Canola	nucleus	19.78	45.06
TraesCS1D01G225200.1	Wheat	nucleus	36.31	44.08
TraesCS1B01G236900.1	Wheat	nucleus	35.5	43.23
Os05t0350900-01	Rice	nucleus	23.85	41.71
TraesCS1A01G223600.1	Wheat	nucleus	36.31	40.48
HORVU1Hr1G060030.1	Barley	nucleus	36.04	39.82
Zm00001d041935_P001	Maize	nucleus	27.64	38.64
Zm00001d015614_P001	Maize	nucleus	28.46	34.54
Zm00001d005300_P001	Maize	nucleus	25.47	32.98
Zm00001d046632_P001	Maize	nucleus	27.1	32.89
Zm00001d036768_P001	Maize	nucleus	27.1	32.47
Zm00001d037999_P001	Maize	nucleus	25.2	31.96
CDY43567	Canola	nucleus	17.07	29.03
Zm00001d004681_P001	Maize	nucleus	14.91	28.8
Zm00001d037998_P001	Maize	nucleus	24.66	28.35
Zm00001d019712_P001	Maize	nucleus	26.29	28.12
Zm00001d041818_P001	Maize	nucleus	16.26	26.67
Zm00001d013399_P001	Maize	nucleus	16.26	25.0
Zm00001d033815_P001	Maize	nucleus	16.26	24.19
Zm00001d049079_P001	Maize	nucleus	16.53	22.02
Zm00001d040426_P001	Maize	nucleus	16.53	21.94
Zm00001d012379_P001	Maize	nucleus	23.31	21.45
Zm00001d008251_P002	Maize	nucleus	17.07	21.07
Zm00001d040423_P001	Maize	nucleus	16.53	20.47
Zm00001d040428_P001	Maize	nucleus	14.63	19.08
Zm00001d032194_P002	Maize	nucleus, plastid	17.62	17.02
CDX83108	Canola	cytosol	0.54	5.13

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:103630256	MapMan:15.5.2.1	ProteinID:AIB05150.1	ProteinID:AQK85446.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7V3M2
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF907	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000221B4B5	EnsemblPlantsGene:Zm00001d037994	EnsemblPlants:Zm00001d037994_P001	EnsemblPlants:Zm00001d037994_T001
SEG:seg	:	:	:	:	:

Description

MYB-transcription factor 119Putative MYB DNA-binding domain superfamily protein

Coordinates

chr6:+:144651004..144652113

Molecular Weight (calculated)

38546.0 Da

IEP (calculated)

7.410

GRAVY (calculated)

-0.528

Length

369 amino acids

Sequence
(BLAST)

001: MVVSSSGGAG GVEGGSGCGV SASVPPVVSS SGGAGEVEGG DGGSAAVSGC RRRVKGSWTP EEDELLRRAI TRHGPRNWTV ISSEIPGRSG KSCRLRWCNQ
101: LSPSVERRAF TPEEDAIIVA AHAQHGNRWA TIARMLHGRT DNSVKNHWNS TLLRQRRAAA AHASAAGCAL QLRPATTASV PLRHLLDRPK EAAASVSFRR
201: LDPKAEEEED EDMDEGGSSS EDSAHRHRSL SPAPVEPLTL NLFSDGAHGL PTPAPAPAPQ GTAARTEGAA MRRKAKLEQD PWLSGGVHGA PAPAPQSAAA
301: RTEGAVVTRM KTKLEHDPWL VTLVRQMISV EVERQMHGVG PQARSSAGGG GGADGDGVNG QDTSMDVDP

Best Arabidopsis Sequence Match ( AT3G55730.1 )
(BLAST)

001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS

Arabidopsis Description

MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.