Factsheet for Zm00001d040428_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02760	Sorghum	nucleus	67.49	71.54
Zm00001d004681_P001	Maize	nucleus	30.74	45.55
Zm00001d041818_P001	Maize	nucleus	29.68	37.33
Bra039036.1-P	Field mustard	nucleus	25.44	37.31
Zm00001d013399_P001	Maize	nucleus	31.1	36.67
Zm00001d040426_P001	Maize	nucleus	35.69	36.33
Zm00001d040423_P001	Maize	nucleus	37.81	35.91
Zm00001d033815_P001	Maize	nucleus	31.45	35.89
AT5G39700.1	Thale cress	nucleus	24.03	35.79
Zm00001d008251_P002	Maize	nucleus	37.46	35.45
Zm00001d049079_P001	Maize	nucleus	33.22	33.94
CDY44415	Canola	nucleus	29.68	32.18
Bra025652.1-P	Field mustard	nucleus	28.27	30.89
CDY30264	Canola	nucleus	27.56	30.0
Bra033078.1-P	Field mustard	nucleus	29.33	29.02
CDY20004	Canola	nucleus	28.27	27.87
CDY66025	Canola	nucleus	28.27	27.78
CDY67808	Canola	nucleus	15.55	27.67
AT3G29020.2	Thale cress	nucleus	28.62	26.56
CDY66170	Canola	nucleus	28.62	25.8
Zm00001d032194_P002	Maize	nucleus, plastid	33.92	25.13
Zm00001d005300_P001	Maize	nucleus	24.38	24.21
Zm00001d041935_P001	Maize	nucleus	22.26	23.86
Zm00001d019712_P001	Maize	nucleus	27.21	22.32
CDX74436	Canola	nucleus	28.27	22.16
Zm00001d046632_P001	Maize	nucleus	23.67	22.04
Zm00001d036768_P001	Maize	nucleus	23.32	21.43
Zm00001d015614_P001	Maize	nucleus	22.61	21.05
Zm00001d037999_P001	Maize	nucleus	17.67	17.18
Zm00001d037998_P001	Maize	nucleus	16.96	14.95
Zm00001d037994_P001	Maize	nucleus	19.08	14.63
Zm00001d012379_P001	Maize	nucleus	19.43	13.72

Protein Annotations

EnsemblPlants:Zm00001d040428_P001	EnsemblPlants:Zm00001d040428_T001	EnsemblPlantsGene:Zm00001d040428	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF941	PFAM:PF00249	PFscan:PS51294	ProteinID:ONM31330.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000221A572	UniProt:A0A1D6MQP4	MapMan:15.5.2.1	:

Description

MYB-transcription factor 136myb domain protein 110

Coordinates

chr3:-:43065775..43066839

Molecular Weight (calculated)

31932.4 Da

IEP (calculated)

7.121

GRAVY (calculated)

-0.666

Length

283 amino acids

Sequence
(BLAST)

001: MDHFSPALPP THDLVPFQEE NKHIFITEEA YDGHVEEHDG SNSHDGISNQ GKHIVRGHWR SFEDEKLKEL VAQYGPKNWS HISKKLEGRS GKSCRLRWIN
101: QLDPHLNHDT FSMVEEERLL VAHHAYGTKW SLIARLFPGR TDNAVKNHWH VMMARKSRAI QGIKMMSSSN PSPSAKESPH FMPTININQN YGKNMHSQLD
201: AQVEVATTPH IYHAIEFKNS LSTNTTNLSI EGASNMDPHV KTPMQSNFIA ITHSGFSTPS LATEKSGDKF TSPFFDFLGV GDA

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.