Factsheet for Zm00001d041935_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75658	Sorghum	nucleus	87.88	81.4
Os01t0977300-01	Rice	nucleus	52.27	55.2
TraesCS4B01G299000.1	Wheat	nucleus	51.52	52.51
TraesCS4D01G297900.1	Wheat	nucleus	51.14	52.12
HORVU4Hr1G077230.1	Barley	nucleus	51.52	48.75
TraesCS4A01G006100.1	Wheat	nucleus	48.86	47.25
CDX83109	Canola	nucleus	26.52	43.21
Zm00001d005300_P001	Maize	nucleus	37.5	34.74
Zm00001d015614_P001	Maize	nucleus	38.26	33.22
Zm00001d046632_P001	Maize	nucleus	37.5	32.57
Zm00001d036768_P001	Maize	nucleus	36.36	31.17
Zm00001d004681_P001	Maize	nucleus	21.97	30.37
Zm00001d019712_P001	Maize	nucleus	37.88	28.99
Zm00001d037994_P001	Maize	nucleus	38.64	27.64
Zm00001d041818_P001	Maize	nucleus	23.48	27.56
Zm00001d037999_P001	Maize	nucleus	26.89	24.4
Zm00001d013399_P001	Maize	nucleus	21.97	24.17
CDY43567	Canola	nucleus	19.32	23.5
Zm00001d033815_P001	Maize	nucleus	21.97	23.39
Zm00001d040426_P001	Maize	nucleus	24.24	23.02
Zm00001d040428_P001	Maize	nucleus	23.86	22.26
Zm00001d040423_P001	Maize	nucleus	24.62	21.81
Zm00001d037998_P001	Maize	nucleus	26.52	21.81
Zm00001d008251_P002	Maize	nucleus	24.62	21.74
Zm00001d049079_P001	Maize	nucleus	22.73	21.66
Zm00001d012379_P001	Maize	nucleus	29.55	19.45
Zm00001d032194_P002	Maize	nucleus, plastid	25.0	17.28
CDX83108	Canola	cytosol	0.38	2.56

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:103650675	MapMan:15.5.2.1	UniProt:A0A060D156	ProteinID:AIB05015.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
ProteinID:ONM34120.1	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF717	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001E24C7A	EnsemblPlantsGene:Zm00001d041935	EnsemblPlants:Zm00001d041935_P001	EnsemblPlants:Zm00001d041935_T001
SEG:seg	:	:	:	:	:

Description

MYB-transcription factor 127Transcription factor MYB44

Coordinates

chr3:+:144357752..144358546

Molecular Weight (calculated)

27799.6 Da

IEP (calculated)

8.884

GRAVY (calculated)

-0.458

Length

264 amino acids

Sequence
(BLAST)

001: MMKNYPGPAS SSSVAVEVKK GSWSPEEDAL LTRLVEQHGP HRWSLISAPI PGRSGKSCRL RWCNQLSPDV HHRPFTPHED ALILAAHARY GNKWATIARL
101: LPGRTDNSIK NHWNSNLRRC RRRAAAAAVA SRPQVQDSDD APAAAAAHDD QPAAVVAAGG LGGGNSSSGL PPAAAGAATA EAEPSLSLSL GLPLPAAEPA
201: EAAADDESRN SQGQASPLLE EGEGNAQLLA VVRRMVREEV QRQTGQLAYS LMAAAAARAK GHHR

Best Arabidopsis Sequence Match ( AT2G23290.1 )
(BLAST)

001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE

Arabidopsis Description

AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.