Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G297900.1 | Wheat | nucleus | 76.34 | 82.24 |
| TraesCS4B01G299000.1 | Wheat | nucleus | 75.27 | 81.08 |
| TraesCS4A01G006100.1 | Wheat | nucleus | 77.42 | 79.12 |
| Zm00001d041935_P001 | Maize | nucleus | 48.75 | 51.52 |
| Os01t0977300-01 | Rice | nucleus | 42.29 | 47.2 |
| OQU75658 | Sorghum | nucleus | 48.03 | 47.02 |
| CDX83109 | Canola | nucleus | 25.45 | 43.83 |
| HORVU1Hr1G060030.1 | Barley | nucleus | 38.35 | 32.04 |
| HORVU6Hr1G035470.1 | Barley | nucleus | 33.33 | 31.42 |
| HORVU7Hr1G116750.3 | Barley | nucleus | 31.54 | 29.93 |
| HORVU7Hr1G116760.1 | Barley | mitochondrion | 32.26 | 25.28 |
| HORVU4Hr1G008640.1 | Barley | nucleus | 20.43 | 23.46 |
| CDY43567 | Canola | nucleus | 17.2 | 22.12 |
| HORVU4Hr1G017040.2 | Barley | nucleus | 20.79 | 20.86 |
| HORVU3Hr1G038700.2 | Barley | nucleus | 23.66 | 20.0 |
| HORVU5Hr1G049880.1 | Barley | plastid | 30.11 | 19.81 |
| HORVU3Hr1G096010.6 | Barley | nucleus | 21.51 | 15.71 |
| HORVU3Hr1G085570.1 | Barley | plastid | 25.81 | 15.62 |
| CDX83108 | Canola | cytosol | 0.36 | 2.56 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G077230.1 | EnsemblPlantsGene:HORVU4Hr1G077230 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF717 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI000B460488 | UniProt:A0A287PR77 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:603432446..603433455
Molecular Weight (calculated)
29714.9 Da
IEP (calculated)
9.739
GRAVY (calculated)
-0.520
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: SHHHSLVRQM IPAVACIGNS GTDDVTMAPP APVKTGSWSP EEDALLSALV RQHGARRWSV ISAGVPGRTG KSCRLRWCNQ LSPDVQHRPF TAQEDALIVA
101: AQARYGNKWA DIARLLPGRT DNSVKNHWNS NLRRCQRRAR AMAAARASSS SSGSAATAKT QQEQVVRVDR KDETPPAAEH GAATAVVNEP PPMLSLTLTL
201: GLPQMAADGA SEEANAKAKT PSSAGAGDDD ARLMAAMRQV VREEVERQAG QLLYSVVMAS NAARADGTSP SDRPTNGHH
101: AQARYGNKWA DIARLLPGRT DNSVKNHWNS NLRRCQRRAR AMAAARASSS SSGSAATAKT QQEQVVRVDR KDETPPAAEH GAATAVVNEP PPMLSLTLTL
201: GLPQMAADGA SEEANAKAKT PSSAGAGDDD ARLMAAMRQV VREEVERQAG QLLYSVVMAS NAARADGTSP SDRPTNGHH
001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
Arabidopsis Description
AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.