CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041935_P001	Maize	nucleus	81.4	87.88
Os01t0977300-01	Rice	nucleus	48.77	55.6
TraesCS4B01G299000.1	Wheat	nucleus	48.42	53.28
TraesCS4D01G297900.1	Wheat	nucleus	47.37	52.12
HORVU4Hr1G077230.1	Barley	nucleus	47.02	48.03
TraesCS4A01G006100.1	Wheat	nucleus	45.96	47.99
CDX83109	Canola	nucleus	24.21	42.59
EES18041	Sorghum	nucleus	42.11	33.61
EER90085	Sorghum	nucleus	36.14	32.91
EES04668	Sorghum	nucleus	37.19	32.42
EES13945	Sorghum	nucleus	23.16	29.33
EER98550	Sorghum	nucleus	37.54	29.23
EES02759	Sorghum	nucleus	24.21	24.47
CDY43567	Canola	nucleus	18.6	24.42
EER93554	Sorghum	nucleus	20.35	24.27
EES15780	Sorghum	nucleus	20.7	23.41
EES02760	Sorghum	nucleus	21.05	22.47
EES02758	Sorghum	nucleus	23.51	22.11
EES09660	Sorghum	nucleus	20.7	21.38
OQU87862	Sorghum	nucleus	27.72	19.8
OQU80507	Sorghum	nucleus	23.86	9.96
CDX83108	Canola	cytosol	0.35	2.56

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:A0A120GUN5	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:IPR017930	ProteinID:KXG18780.1	InterPro:Myb_dom	EnsemblPlants:OQU75658	ProteinID:OQU75658	ProteinID:OQU75658.1
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF717	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3K043500	SUPFAM:SSF46689	UniParc:UPI00076BBEE6	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chrsuper_88:-:64035..64892

Molecular Weight (calculated)

29895.1 Da

IEP (calculated)

9.379

GRAVY (calculated)

-0.398

Length

285 amino acids

Sequence
(BLAST)

001: MKNPAPASSS SVAVEVKKGS WSPEEDALLT RLVEQHGAHR WSLISAAIPG RSGKSCRLRW CNQLSPDVHH RPFTPHEDAL ILAAHSRYGN KWATIARLLP
101: GRTDNSIKNH WNSNLRRCRR RAAAAAAAAA SRAAAAAGPC IAIGPQQVQD SDDVVPPPAA AAESEHHHSP QQLVAVVAAA GLGGGNSSVL PAGTATAEAE
201: PSLSLSLGLP LPAEEPGAAA DEERRNSQQG HGQASPPVTL QQGEGNAQLL AVVRQMVREE VQRQTGQLAY SLMAAAAAKA KGHHR

Best Arabidopsis Sequence Match ( AT2G23290.1 )
(BLAST)

001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE

Arabidopsis Description

AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.