Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G299000.1 | Wheat | nucleus | 96.14 | 96.14 |
| TraesCS4A01G006100.1 | Wheat | nucleus | 88.03 | 83.52 |
| HORVU4Hr1G077230.1 | Barley | nucleus | 82.24 | 76.34 |
| Zm00001d041935_P001 | Maize | nucleus | 52.12 | 51.14 |
| Os01t0977300-01 | Rice | nucleus | 46.33 | 48.0 |
| OQU75658 | Sorghum | nucleus | 52.12 | 47.37 |
| CDX83109 | Canola | nucleus | 27.8 | 44.44 |
| TraesCS1D01G225200.1 | Wheat | nucleus | 41.7 | 35.53 |
| TraesCS6D01G162900.1 | Wheat | nucleus | 37.07 | 32.32 |
| TraesCS7D01G515100.1 | Wheat | nucleus | 35.91 | 31.63 |
| TraesCS7D01G515000.1 | Wheat | nucleus | 35.91 | 31.21 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 35.52 | 26.82 |
| TraesCS7D01G514800.1 | Wheat | nucleus | 36.29 | 26.26 |
| CDY43567 | Canola | nucleus | 20.08 | 23.96 |
| TraesCS4D01G052600.1 | Wheat | nucleus | 21.24 | 22.0 |
| TraesCS4D01G102100.1 | Wheat | nucleus | 22.39 | 20.94 |
| TraesCS3D01G191400.1 | Wheat | nucleus | 25.48 | 20.56 |
| TraesCS3D01G432300.2 | Wheat | nucleus | 22.78 | 16.67 |
| TraesCS3D01G358400.1 | Wheat | nucleus | 28.19 | 15.56 |
| CDX83108 | Canola | cytosol | 0.39 | 2.56 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G297900.1 | EnsemblPlantsGene:TraesCS4D01G297900 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF717 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:467224823..467225602
Molecular Weight (calculated)
27671.9 Da
IEP (calculated)
10.507
GRAVY (calculated)
-0.474
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMPAPIKTG SWSPEEDALL VALVRQHGAR RWSVISAGVP GRTGKSCRLR WCNQLSPAVQ HRPFTAQEDA LIIAAQARYG NKWADIARLL PGRTDNSVKN
101: HWNSNLRRCQ RRAKAMAAAA AARAAASSSS SSGSAARAKT QQQEQVVVMN GTPPAAVHGA GSAAVDDPLP MPSLTLSLGL PQMAADRASE EAKAKEKEKT
201: PPPVGVGDDE VRLMAAMRQM VREEVERQAG QLLYSVVMAT TAARTDGTSP SDRPTNGHH
101: HWNSNLRRCQ RRAKAMAAAA AARAAASSSS SSGSAARAKT QQQEQVVVMN GTPPAAVHGA GSAAVDDPLP MPSLTLSLGL PQMAADRASE EAKAKEKEKT
201: PPPVGVGDDE VRLMAAMRQM VREEVERQAG QLLYSVVMAT TAARTDGTSP SDRPTNGHH
001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
Arabidopsis Description
AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.