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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d012379_P001 Maize nucleus 85.71 85.29
Os01t0850400-01 Rice nucleus 65.16 62.95
TraesCS3A01G365200.1 Wheat nucleus 61.15 52.81
TraesCS3B01G397100.1 Wheat nucleus 61.15 52.14
TraesCS3D01G358400.1 Wheat nucleus 60.9 51.81
HORVU3Hr1G085570.1 Barley plastid 56.64 49.02
GSMUA_Achr6P33470_001 Banana nucleus 26.32 46.67
GSMUA_Achr9P03720_001 Banana nucleus 35.84 44.41
KRG88785 Soybean nucleus 37.34 42.33
KRH75766 Soybean nucleus 37.09 42.29
PGSC0003DMT400052395 Potato nucleus 37.59 39.58
Solyc09g011780.2.1 Tomato nucleus 37.59 39.47
PGSC0003DMT400069921 Potato nucleus 36.09 38.5
VIT_13s0019g03200.t01 Wine grape nucleus 36.34 38.36
Solyc05g052850.2.1 Tomato nucleus 35.84 38.24
VIT_08s0007g01540.t01 Wine grape nucleus 37.34 36.34
CDX72208 Canola nucleus 33.08 35.87
Bra007186.1-P Field mustard nucleus 33.33 35.85
CDY27271 Canola nucleus 33.33 35.66
KRH15016 Soybean nucleus 34.84 35.37
AT3G55730.1 Thale cress nucleus 35.09 35.09
CDY20494 Canola nucleus 31.58 34.24
KRH73115 Soybean nucleus 32.58 32.58
Bra005006.1-P Field mustard nucleus 31.33 31.41
GSMUA_Achr5P28780_001 Banana nucleus 30.58 30.73
CDX74825 Canola nucleus 30.83 30.67
AT2G39880.1 Thale cress nucleus 27.07 29.43
EER90085 Sorghum nucleus 23.06 29.39
EES04668 Sorghum nucleus 22.81 27.83
OQU75658 Sorghum nucleus 19.8 27.72
EER93554 Sorghum nucleus 16.29 27.2
EES13945 Sorghum nucleus 14.54 25.78
EES09660 Sorghum nucleus 17.79 25.72
EER98550 Sorghum nucleus 23.56 25.68
EES15780 Sorghum nucleus 15.79 25.0
EES18041 Sorghum nucleus 21.8 24.37
EES02758 Sorghum nucleus 18.05 23.76
EES02759 Sorghum nucleus 16.79 23.76
EES02760 Sorghum nucleus 15.54 23.22
OQU80507 Sorghum nucleus 19.05 11.13
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.1EntrezGene:8058913UniProt:A0A1W0W0H5GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domEnsemblPlants:OQU87862
ProteinID:OQU87862ProteinID:OQU87862.1PFAM:PF00249PFscan:PS51294PANTHER:PTHR10641PANTHER:PTHR10641:SF524
InterPro:SANT/MybSMART:SM00717EnsemblPlantsGene:SORBI_3003G357300SUPFAM:SSF46689UniParc:UPI0001A851F1RefSeq:XP_002458769.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr3:-:67562436..67564795
Molecular Weight (calculated)
42817.8 Da
IEP (calculated)
5.757
GRAVY (calculated)
-0.493
Length
399 amino acids
Sequence
(BLAST)
001: MSAAETAVSP APQPPSDPNA AANADAAHSN SFSMADEAQT LTEALLQPQP NHMSPPPSGE EDDGVTASGA PVGGDAAASA AAAAAANATM EERVRGPWSP
101: EEDTVLSNLV EKLGARNWTL IARGIPGRSG KSCRLRWCNQ LDPQVKRKPF TEEEDRIIMA AHAVHGNKWA CIAKLLDGRT DNAIKNHWNS TLRRRYCNDG
201: RCKHGGSVQR SILEVSRAVS EEPWPSKDLS SFNAMDVSDA PVQTVPETSA GAWHITDQCS MTQGVDPPYL SRPAAKIGAF RPYNLGHTEP TQQEIPSSVV
301: KSDSTHKVLT PESEVFKFVD PICFSAEVPS KCGHGCCGAH KQPRKNSLLG PEFNEFEDHP PILNTSFASL VSEISSIAWM RSGMQSSDAS TLFQSVPPT
Best Arabidopsis Sequence Match ( AT3G55730.1 )
(BLAST)
001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
Arabidopsis Description
MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.