Factsheet for VIT_08s0007g01540.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75766	Soybean	nucleus	56.59	66.29
KRG88785	Soybean	nucleus	56.83	66.19
PGSC0003DMT400052395	Potato	nucleus	53.9	58.31
Solyc09g011780.2.1	Tomato	nucleus	53.17	57.37
VIT_13s0019g03200.t01	Wine grape	nucleus	51.95	56.35
GSMUA_Achr9P03720_001	Banana	nucleus	43.41	55.28
GSMUA_Achr6P33470_001	Banana	nucleus	26.59	48.44
Zm00001d012379_P001	Maize	nucleus	37.56	38.4
VIT_07s0129g01050.t01	Wine grape	nucleus	28.78	37.82
VIT_18s0001g11170.t01	Wine grape	nucleus	20.98	37.55
OQU87862	Sorghum	nucleus	36.34	37.34
Os01t0850400-01	Rice	nucleus	37.07	36.8
VIT_13s0067g01360.t01	Wine grape	nucleus	22.68	36.76
VIT_03s0180g00210.t01	Wine grape	nucleus	26.59	35.97
VIT_18s0001g09850.t01	Wine grape	nucleus	26.83	35.14
GSMUA_Achr5P28780_001	Banana	nucleus	32.93	34.01
TraesCS3B01G397100.1	Wheat	nucleus	38.29	33.55
HORVU3Hr1G085570.1	Barley	plastid	37.07	32.97
TraesCS3A01G365200.1	Wheat	nucleus	37.07	32.9
TraesCS3D01G358400.1	Wheat	nucleus	37.32	32.62
VIT_17s0000g01890.t01	Wine grape	nucleus	16.59	30.77
VIT_18s0001g15260.t01	Wine grape	nucleus	20.73	26.48
VIT_04s0044g01380.t01	Wine grape	nucleus	17.8	24.17
VIT_01s0026g02600.t01	Wine grape	nucleus	19.27	17.29
VIT_08s0056g01190.t01	Wine grape	golgi	17.8	16.37
VIT_14s0108g01010.t01	Wine grape	nucleus	16.59	14.29

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100247435	wikigene:100247435	EntrezGene:100256309	wikigene:100256309	MapMan:15.5.2.1
ProteinID:CBI30456	ProteinID:CBI30456.3	UniProt:D7THE0	EMBL:FN595991	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100247435	wikigene:LOC100247435	EntrezGene:LOC100256309	wikigene:LOC100256309
InterPro:Myb_dom	PFAM:PF13921	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF524	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00015C96BC	ArrayExpress:VIT_08s0007g01540	EnsemblPlantsGene:VIT_08s0007g01540	EnsemblPlants:VIT_08s0007g01540.t01
unigene:Vvi.6487	RefSeq:XP_002276375	RefSeq:XP_002276375.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:15637267..15644017

Molecular Weight (calculated)

44223.9 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.565

Length

410 amino acids

Sequence
(BLAST)

001: MEDITVVEGE GADGGSPGDA MVVGEGEGNG KGSGSSSQAA RGDRVKGPWS PEEDAILSRL VSKFGARNWS LIARGIAGRS GKSCRLRWCN QLDPSVKRKP
101: FTDEEDRIIV AAHAIHGNKW ASIARLLQGR TDNAIKNHWN STLRRRCMEI DRAKLESGNI VEDVSLDKTK ASSEETMSCG DANSSKSLEG KDVNSSDNMA
201: DQNEERAQIE GQFSHEAQDP PTLFRPVARV SAFNVYSSLD GPEHAFPFPR PVPMQGPLIQ ASTPDAGICK LIQGDSGEQL VPQRCGHGCC ESPRGGNLGN
301: SLLGPEFVEF SEPPPFSSFE LAAIATDISN IAWLKSGLEN STVRVMGDAA GRTMSRGSQV QMARFEESRK NDHLRFEEGK NKLMGMMTDV RSTQIGKQSF
401: SVPAKVGGLS

Best Arabidopsis Sequence Match ( AT3G09230.1 )
(BLAST)

001: MEAEIVRRSE VTGLRREVEE SSIGRGDCDG DGGDVGEDAA GFVGTSGRGR RDRVKGPWSK EEDDVLSELV KRLGARNWSF IARSIPGRSG KSCRLRWCNQ
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST

Arabidopsis Description

MYB1Transcription factor MYB1 [Source:UniProtKB/Swiss-Prot;Acc:Q42575]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.