Factsheet for VIT_08s0056g01190.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g01890.t01	Wine grape	nucleus	23.54	47.51
PGSC0003DMT400072258	Potato	nucleus	30.72	42.68
Solyc10g081320.1.1	Tomato	nucleus	30.27	42.32
KRG94926	Soybean	nucleus	34.53	40.74
CDX85443	Canola	nucleus	27.8	40.39
CDY69058	Canola	nucleus	23.54	39.77
CDY02687	Canola	nucleus	27.35	39.35
Bra006422.1-P	Field mustard	nucleus	27.35	38.98
CDY16884	Canola	nucleus	27.13	38.78
KRH64970	Soybean	nucleus	35.2	38.77
CDX70776	Canola	nucleus	27.13	38.66
CDX78761	Canola	nucleus	27.13	38.66
Bra023637.1-P	Field mustard	nucleus	27.35	38.36
Bra002107.1-P	Field mustard	nucleus	27.35	37.65
AT5G17800.1	Thale cress	nucleus	27.13	37.46
CDY38460	Canola	nucleus	27.13	37.35
VIT_04s0044g01380.t01	Wine grape	nucleus	24.89	36.76
VIT_18s0001g15260.t01	Wine grape	nucleus	25.11	34.89
VIT_01s0026g02600.t01	Wine grape	nucleus	32.29	31.51
VIT_18s0001g11170.t01	Wine grape	nucleus	15.25	29.69
VIT_14s0108g01010.t01	Wine grape	nucleus	30.49	28.57
VIT_13s0067g01360.t01	Wine grape	nucleus	15.25	26.88
VIT_07s0129g01050.t01	Wine grape	nucleus	17.71	25.32
VIT_18s0001g09850.t01	Wine grape	nucleus	16.82	23.96
VIT_03s0180g00210.t01	Wine grape	nucleus	15.47	22.77
VIT_13s0019g03200.t01	Wine grape	nucleus	16.82	19.84
VIT_08s0007g01540.t01	Wine grape	nucleus	16.37	17.8

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ProteinID:CBI31210	ProteinID:CBI31210.3	UniProt:D7TL38	EMBL:FN595995
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF941	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TMHMM:TMhelix	UniParc:UPI0001BE385C	ArrayExpress:VIT_08s0056g01190	EnsemblPlantsGene:VIT_08s0056g01190	EnsemblPlants:VIT_08s0056g01190.t01	SEG:seg

Description

No Description!

Coordinates

chr8:+:1862461..1866385

Molecular Weight (calculated)

49343.5 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.552

Length

446 amino acids

Sequence
(BLAST)

001: MYIFFFLFCQ IVLVALWYKW FPLIFLHFLS SSSFLGSSEF VVTMSLVENP SGGGGNSDVM LSLSSGYSEE NEFMGSDKGG EILTPHPLEG EENDRSVEGS
101: DGCFGDEKME EVNGFGPGEE EEGEDSEQNS GEVKSGQNKV CVRGHWRPHE DAKLREAVAQ HGPQNWNLIA EKLVGRSGKS CRLRWFNQLD PRINRRAFSG
201: EEEDRLLAAH RLYGNKWAMI ARAFPGRTDN AVKNHWHVIM ARRHRAQSSI YRRRKPSFSS SASSPFSQTL LPRGLDMIMT HPNSSQTIPM GLSIINHPSY
301: SPSYSSHLIT HQPIPRGLDV VTHQNNAGSE STITSTIDES ASSGTDLSLK AYSNRADLPG IFTNYTPAMQ QQLHLIGLDL QMGLPGVYEK PNGLYRAGNS
401: DSNSEASATS AANTRNNHYL HGENENGNGN KDYNTPFIDF LGVGAT

Best Arabidopsis Sequence Match ( AT1G69560.2 )
(BLAST)

001: MMFKVIFNIC SSPPMRMEMV HADVASLSIT PCFPSSLSSS SHHHYNQQQH CIMSEDQHHS MDQTTSSDYF SLNIDNAQHL RSYYTSHREE DMNPNLSDYS
101: NCNKKDTTVY RSCGHSSKAS VSRGHWRPAE DTKLKELVAV YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH RLYGNKWAMI
201: ARLFPGRTDN SVKNHWHVIM ARKFREQSSS YRRRKTMVSL KPLINPNPHI FNDFDPTRLA LTHLASSDHK QLMLPVPCFP GYDHENESPL MVDMFETQMM
301: VGDYIAWTQE ATTFDFLNQT GKSEIFERIN EEKKPPFFDF LGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.