Factsheet for Bra002107.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38460	Canola	nucleus	98.15	98.15
CDY16884	Canola	nucleus	93.52	97.12
Bra023637.1-P	Field mustard	nucleus	78.4	79.87
Bra006422.1-P	Field mustard	nucleus	74.07	76.68
AT5G17800.1	Thale cress	nucleus	73.15	73.37
Bra039036.1-P	Field mustard	nucleus	26.23	44.04
Bra015992.1-P	Field mustard	nucleus	30.25	42.98
Bra016575.1-P	Field mustard	nucleus	31.79	42.56
Bra008096.1-P	Field mustard	nucleus	29.94	41.45
Bra031008.1-P	Field mustard	nucleus	30.56	40.08
PGSC0003DMT400072258	Potato	nucleus	37.04	37.38
Bra011441.1-P	Field mustard	nucleus	28.4	36.95
Solyc10g081320.1.1	Tomato	nucleus	36.11	36.68
Bra034565.1-P	Field mustard	nucleus	28.4	36.65
Bra025652.1-P	Field mustard	nucleus	28.7	35.91
Bra003995.1-P	Field mustard	nucleus	31.79	34.68
Bra004394.1-P	Field mustard	nucleus	33.02	33.44
Bra037004.1-P	Field mustard	nucleus	24.69	33.2
KRG94926	Soybean	nucleus	38.58	33.07
Bra033078.1-P	Field mustard	nucleus	28.4	32.17
KRH64970	Soybean	nucleus	39.81	31.85
Bra016285.1-P	Field mustard	nucleus	33.95	31.16
VIT_08s0056g01190.t01	Wine grape	golgi	37.65	27.35
Bra017813.1-P	Field mustard	nucleus	20.37	24.91
Bra036048.1-P	Field mustard	nucleus	19.75	24.06
Bra032176.1-P	Field mustard	nucleus	20.99	23.29
Bra010593.1-P	Field mustard	nucleus	21.91	23.28
Bra012149.1-P	Field mustard	nucleus	20.68	22.64
Bra012910.1-P	Field mustard	nucleus	20.06	22.18
Bra011749.1-P	Field mustard	nucleus	22.22	21.95
Bra029990.1-P	Field mustard	nucleus	19.14	21.09
Bra001323.1-P	Field mustard	nucleus	19.44	18.81
Bra005006.1-P	Field mustard	nucleus	21.3	17.34
Bra007186.1-P	Field mustard	nucleus	19.75	17.25
Bra034057.1-P	Field mustard	nucleus	20.06	16.8

Protein Annotations

EnsemblPlants:Bra002107.1	EnsemblPlants:Bra002107.1-P	EnsemblPlantsGene:Bra002107	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF941	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002543B41	UniProt:M4CD26	MapMan:15.5.2.1	:	:

Description

AT5G17800 (E=2e-070) AtMYB56 | AtMYB56 (myb domain protein 56); DNA binding / transcription factor

Coordinates

chrA10:-:11410391..11412270

Molecular Weight (calculated)

36852.9 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.950

Length

324 amino acids

Sequence
(BLAST)

001: MNPNLLKNNL TGNYTINDSR RFEVRNNFRS PPHSHPNFSL ARKHPHDKSV SVLESGDEHE KERGENGLKR RGKNGIYSKL CSRGHWRPTE DAKLKEPVAQ
101: FGPQNWNVIA HHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEESRLLAVH QAYGNKWALI SRLFPGRTDN AVKNHWHVIM SRRTRESQRQ RQMQTPQAPS
201: GNAEIVSSSS RYNHGELFGT VANGTVVNEK DDDGDDEDAS AVSTCTTELS LTLPSSTHQA RFLNYDSTLV PGKDGQCVQR AEVNGKYSKK MDHQNHHTIT
301: VSEERKVEMQ SGFYFFDFLG VGAS

Best Arabidopsis Sequence Match ( AT5G17800.1 )
(BLAST)

001: MNPNLLEKDL RGKETTNGSI RYKEANNFRS LPNSHTAACK TSLNNPSISR NHPHNKSASV LESEDEHGNE RGENEKSLRM RGKSGINTKV CSRGHWRPTE
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS

Arabidopsis Description

MYB56Transcription factor MYB56 [Source:UniProtKB/Swiss-Prot;Acc:Q6R053]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.