Factsheet for Bra007186.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27271	Canola	nucleus	98.92	98.39
CDX72208	Canola	nucleus	96.23	97.01
AT3G55730.1	Thale cress	nucleus	78.44	72.93
Bra005006.1-P	Field mustard	nucleus	49.6	46.23
GSMUA_Achr6P33470_001	Banana	nucleus	25.88	42.67
VIT_13s0019g03200.t01	Wine grape	nucleus	43.13	42.33
Solyc05g052850.2.1	Tomato	nucleus	42.05	41.71
PGSC0003DMT400069921	Potato	nucleus	42.05	41.71
GSMUA_Achr9P03720_001	Banana	nucleus	36.12	41.61
KRH15016	Soybean	nucleus	40.97	38.68
Bra001323.1-P	Field mustard	nucleus	34.23	37.91
KRH73115	Soybean	nucleus	37.2	34.59
Bra034057.1-P	Field mustard	nucleus	35.31	33.85
OQU87862	Sorghum	nucleus	35.85	33.33
Zm00001d012379_P001	Maize	nucleus	35.58	32.92
Os01t0850400-01	Rice	nucleus	36.39	32.69
Bra039036.1-P	Field mustard	nucleus	16.71	32.12
Bra032176.1-P	Field mustard	nucleus	24.8	31.51
Bra017813.1-P	Field mustard	nucleus	22.37	31.32
Bra036048.1-P	Field mustard	nucleus	22.37	31.2
Bra012149.1-P	Field mustard	nucleus	24.53	30.74
TraesCS3A01G365200.1	Wheat	nucleus	38.27	30.74
Bra012910.1-P	Field mustard	nucleus	24.26	30.72
Bra010593.1-P	Field mustard	nucleus	24.8	30.16
TraesCS3B01G397100.1	Wheat	nucleus	38.01	30.13
TraesCS3D01G358400.1	Wheat	nucleus	38.01	30.06
HORVU3Hr1G085570.1	Barley	plastid	36.93	29.72
GSMUA_Achr5P28780_001	Banana	nucleus	31.0	28.97
Bra011749.1-P	Field mustard	nucleus	25.34	28.66
Bra029990.1-P	Field mustard	nucleus	22.1	27.89
Bra008096.1-P	Field mustard	nucleus	16.98	26.92
Bra015992.1-P	Field mustard	nucleus	16.44	26.75
Bra025652.1-P	Field mustard	nucleus	17.79	25.48
Bra016575.1-P	Field mustard	nucleus	16.44	25.21
Bra037004.1-P	Field mustard	nucleus	16.17	24.9
Bra011441.1-P	Field mustard	nucleus	16.44	24.5
Bra034565.1-P	Field mustard	nucleus	16.17	23.9
Bra031008.1-P	Field mustard	nucleus	15.9	23.89
Bra003995.1-P	Field mustard	nucleus	18.87	23.57
Bra033078.1-P	Field mustard	nucleus	17.79	23.08
Bra004394.1-P	Field mustard	nucleus	18.87	21.88
Bra016285.1-P	Field mustard	nucleus	19.68	20.68
Bra006422.1-P	Field mustard	nucleus	17.25	20.45
Bra023637.1-P	Field mustard	nucleus	17.25	20.13
Bra002107.1-P	Field mustard	nucleus	17.25	19.75

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra007186	EnsemblPlants:Bra007186.1	EnsemblPlants:Bra007186.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009723	GO:GO:0009733	GO:GO:0009737	GO:GO:0009739	GO:GO:0009751
GO:GO:0009753	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CSJ4	InterPro:Myb_dom	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF524	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002542AA2	SEG:seg	:	:	:	:

Description

AT3G55730 (E=1e-145) MYB109, AtMYB109 | MYB109 (myb domain protein 109); DNA binding / transcription factor

Coordinates

chrA09:-:27832172..27833720

Molecular Weight (calculated)

41049.3 Da

IEP (calculated)

5.465

GRAVY (calculated)

-0.525

Length

371 amino acids

Sequence
(BLAST)

001: MDRSEPLPFP SSADSDDVTT AAAELAAGDS SGGGYEVKSK VKGPWSTEED AVLTKLVSKL GPRNWSLIAR GIPGRSGKSC RLRWCNQLDP CLKRKPFSDE
101: EDHMIISAHA IHGNKWAVIA KLLPGRTDNA IKNHWNSTLR RKYADLWKNS SQVTTAYIKN ENVEQQLPQE EIVSPPEVPQ VVDVTMYDEP TQVLDDVTMD
201: DASPNEPQEQ APIESSIPVF RPVARAGAFR VYNPTSQRNG YRDHNVVPCE GPLIQAAKPD SLAGKFLQSL CGEPNIPSKC GHGCSTHPAE YGKSVLGAEF
301: VDYEEPCPVF NQELISIATD LNNIAWIKSG LDNAIVREAE QNLKMDQITF SDPRIRFSGM MPRQHFFCAR S

Best Arabidopsis Sequence Match ( AT3G55730.1 )
(BLAST)

001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS

Arabidopsis Description

MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.